MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:114.2 nTPM
HPA:114.2 nTPM
GTEx:62.5 nTPM
FANTOM5:84.8 Scaled Tags Per Million
Pig:37.1 nTPM
Mouse:179.1 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.9
1870 Female, age 42, unknown 113.7
2219 Male, age 76, both hemispheres 111.4
2666 Male, age 74, left hemisphere 108.7
1827 Male, age 72, unknown 107.9
2586 Male, age 75, left hemisphere 107.1
1833 Male, age 53, unknown 107.0
2411 Female, age 72, unknown 106.8
2019 Male, age 18, unknown 106.3
1830 Male, age 51, unknown 105.6
2828 Female, age 72, unknown 104.7
Dorsal raphe nucleus
nTPM: 108.3
1828 Male, age 53, unknown 111.3
2047 Male, age 72, unknown 109.0
2298 Female, age 72, unknown 107.4
2750 Male, age 76, both hemispheres 107.4
2016 Female, age 72, unknown 106.3
Inferior colliculus
nTPM: 110.8
2849 Male, age 72, unknown 114.6
1890 Male, age 53, unknown 113.6
1848 Female, age 42, unknown 108.1
2097 Female, age 72, unknown 106.8
Median raphe nucleus
nTPM: 114.2
2220 Male, age 76, midline 114.2
Pedunculopontine tegmental nucleus
nTPM: 113.9
2338 Male, age 61, both hemispheres 118.9
2334 Male, age 80, both hemispheres 112.8
1921 Female, age 85, both hemispheres 110.0
Periaquaductal grey, anterior
nTPM: 107.8
1795 Male, age 51, unknown 109.3
2502 Female, age 75, unknown 108.0
1947 Male, age 18, unknown 106.2
Periaquaductal grey, dorsal
nTPM: 108.6
2850 Male, age 76, both hemispheres 119.3
1840 Male, age 53, unknown 107.0
1831 Male, age 72, unknown 105.2
2464 Female, age 72, unknown 102.8
Periaquaductal grey, lateral
nTPM: 107.3
2272 Male, age 74, both hemispheres 107.9
2140 Male, age 76, both hemispheres 107.1
2053 Male, age 18, unknown 106.7
Pretectal area
nTPM: 109.0
2667 Female, age 75, unknown 114.8
1944 Female, age 72, unknown 113.0
1817 Female, age 42, unknown 112.2
1816 Male, age 51, unknown 112.1
2007 Male, age 72, unknown 110.9
1815 Male, age 53, unknown 110.0
2273 Male, age 74, both hemispheres 106.9
2825 Male, age 18, unknown 106.3
2224 Female, age 72, unknown 106.0
2316 Male, age 76, right hemisphere 105.5
2407 Male, age 75, both hemispheres 101.8
Red nucleus
nTPM: 111.4
2725 Female, age 75, unknown 118.0
1865 Male, age 51, unknown 114.6
2503 Female, age 72, unknown 114.2
1821 Female, age 72, unknown 113.2
1904 Male, age 53, unknown 111.9
2823 Male, age 76, right hemisphere 111.8
2785 Male, age 18, unknown 111.3
1954 Female, age 42, unknown 111.2
2769 Male, age 72, unknown 109.6
2227 Male, age 72, unknown 108.7
2588 Male, age 74, left hemisphere 107.2
2584 Male, age 75, left hemisphere 105.1
Substantia nigra
nTPM: 113.8
2699 Male, age 18, unknown 123.1
1916 Female, age 42, unknown 122.8
2409 Female, age 72, unknown 118.2
2665 Male, age 74, both hemispheres 114.6
2241 Male, age 72, unknown 114.1
1889 Female, age 72, unknown 113.5
1941 Male, age 53, unknown 112.0
1851 Male, age 51, unknown 111.9
2583 Male, age 75, right hemisphere 105.4
2590 Female, age 75, unknown 102.1
Superior colliculus
nTPM: 107.2
1895 Male, age 76, right hemisphere 113.8
1913 Female, age 42, unknown 108.3
2587 Male, age 74, left hemisphere 108.1
2668 Female, age 75, unknown 107.5
1796 Male, age 53, unknown 106.8
2087 Female, age 72, unknown 106.8
1995 Male, age 72, unknown 106.5
2261 Male, age 18, unknown 106.1
1839 Male, age 51, unknown 105.3
2664 Male, age 75, both hemispheres 102.6
Ventral tegmental area
nTPM: 111.1
1915 Female, age 42, unknown 115.2
2218 Male, age 76, both hemispheres 114.3
2223 Female, age 72, unknown 111.9
2410 Female, age 72, unknown 110.2
1942 Male, age 51, unknown 108.5
2021 Male, age 53, unknown 106.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.5
Samples: 139

Max nTPM: 110.3
Min nTPM: 21.2
Std nTPM: 14.6
Median nTPM: 60.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 110.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 106.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 103.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 95.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 95.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 92.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 88.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 88.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 88.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 88.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.8
FF:10158-103A5 76 years, female 84.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.1
Pig sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 43.6
Min nTPM: 29.2
Sample A Female 34.9
Sample B Female 31.6
Sample C Male 43.6
Sample D Male 29.2
Periaqueductal gray
nTPM: 27.1
Samples: 3

Max nTPM: 33.5
Min nTPM: 21.7
Sample B Female 26.0
Sample C Male 33.5
Sample D Male 21.7
Substantia nigra
nTPM: 32.9
Samples: 4

Max nTPM: 44.9
Min nTPM: 21.6
Sample A Female 44.9
Sample B Female 26.3
Sample C Male 38.8
Sample D Male 21.6
Superior colliculi
nTPM: 37.1
Samples: 4

Max nTPM: 49.4
Min nTPM: 26.5
Sample A Female 39.5
Sample B Female 26.5
Sample C Male 49.4
Sample D Male 32.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 179.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.1
Samples: 4

Max nTPM: 198.8
Min nTPM: 158.3
Sample A Male 198.8
Sample B Male 167.3
Sample C Female 158.3
Sample D Female 191.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.