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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:111.5 nTPM
HPA:111.5 nTPM
GTEx:59.8 nTPM
FANTOM5:77.2 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:181.2 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 111.5
Sample id Sample description nTPM
Amygdala
nTPM: 111.5
2695 Female, age 67, right hemisphere 116.0
2514 Male, age 75, right hemisphere 113.4
2814 Male, age 76, right hemisphere 113.0
2517 Female, age 94, left hemisphere 108.4
1987 Female, age 91, left hemisphere 106.5
Basal amygdala
nTPM: 108.0
2609 Male, age 75, right hemisphere 112.5
1955 Male, age 76, both hemispheres 111.4
2243 Female, age 91, right hemisphere 109.1
2685 Female, age 94, left hemisphere 106.5
2110 Male, age 80, left hemisphere 105.2
2827 Female, age 67, right hemisphere 103.4
Central amygdala
nTPM: 108.8
2826 Female, age 94, left hemisphere 113.6
1905 Male, age 76, both hemispheres 110.6
2239 Male, age 80, left hemisphere 107.8
2515 Male, age 75, right hemisphere 106.9
2701 Female, age 91, right hemisphere 105.2
Corticomedial amygdala
nTPM: 109.1
2240 Male, age 76, both hemispheres 113.0
2242 Female, age 91, right hemisphere 110.6
2428 Male, age 75, right hemisphere 108.8
2429 Female, age 94, left hemisphere 108.7
2535 Female, age 67, right hemisphere 107.2
2829 Male, age 80, left hemisphere 106.2
Lateral amygdala
nTPM: 106.0
1883 Male, age 76, both hemispheres 112.4
2534 Female, age 94, left hemisphere 110.6
2516 Male, age 75, right hemisphere 109.5
2255 Female, age 91, right hemisphere 102.2
2830 Female, age 67, right hemisphere 101.0
2256 Male, age 80, left hemisphere 100.6
Stria terminalis, bed nucleus
nTPM: 106.0
1974 Female, age 91, both hemispheres 108.8
2201 Male, age 74, unknown 106.4
2486 Female, age 94, both hemispheres 102.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 59.8
Samples: 152

Max nTPM: 189.9
Min nTPM: 28.5
Std nTPM: 21.7
Median nTPM: 56.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 189.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 165.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 137.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 122.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 119.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 101.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 96.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 95.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 91.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 88.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 87.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 85.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 82.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 82.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 79.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 76.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 74.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 74.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 72.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 72.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 71.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 70.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 68.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 68.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 67.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 67.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 66.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 65.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 65.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 65.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 65.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 65.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 65.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 64.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 64.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 63.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 62.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 62.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 62.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 62.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 61.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 61.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 61.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 61.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 61.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 61.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 60.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 60.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 60.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 60.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 59.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 58.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 58.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 58.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 58.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 57.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 57.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 57.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 57.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 57.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 56.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 56.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 56.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 56.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 56.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 56.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 55.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 55.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 55.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 55.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 54.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 54.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 54.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 54.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 54.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 54.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 54.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 53.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 53.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 53.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 53.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 53.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 52.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 52.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 52.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 51.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 51.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 51.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 51.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 51.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 50.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 50.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 50.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 50.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 49.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 49.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 49.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 49.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 48.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 47.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 47.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 47.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 46.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 44.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 43.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 43.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 42.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 42.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 41.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 41.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 41.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 41.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 40.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 40.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 39.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 39.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 39.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 37.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 35.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 35.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 35.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 35.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 34.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 33.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 31.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 30.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 28.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 77.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 77.2
FF:10151-102I7 76 years, female 77.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.5
Pig sample Sample description nTPM
Amygdala
nTPM: 25.5
Samples: 4

Max nTPM: 32.6
Min nTPM: 19.4
Sample A Female 32.6
Sample B Female 24.4
Sample C Male 25.4
Sample D Male 19.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 181.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 181.3
Samples: 4

Max nTPM: 205.1
Min nTPM: 159.0
Sample A Male 185.2
Sample B Male 175.7
Sample C Female 205.1
Sample D Female 159.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.4

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