BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:111.9 nTPM
HPA:111.9 nTPM
GTEx:62.7 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:219.0 nTPM
Allen mouse:0.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA064221
Glial cells Medium
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 111.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 111.9
2481 Female, age 94, left hemisphere 117.5
2846 Female, age 79, unknown 116.8
2290 Female, age 72, unknown 114.6
1857 Female, age 85, left hemisphere 113.8
1854 Male, age 80, left hemisphere 110.9
1781 Male, age 74, unknown 108.6
2288 Male, age 75, left hemisphere 108.3
2289 Male, age 61, right hemisphere 105.1
Claustrum
nTPM: 108.8
1956 Male, age 74, unknown 119.0
2196 Female, age 79, unknown 118.6
2198 Male, age 80, both hemispheres 112.4
2491 Male, age 75, both hemispheres 107.8
2568 Male, age 61, both hemispheres 105.8
2292 Female, age 85, both hemispheres 105.4
2284 Female, age 91, both hemispheres 104.2
2392 Female, age 94, both hemispheres 103.0
2645 Female, age 72, unknown 102.6
Globus pallidus, externus
nTPM: 111.4
2772 Female, age 79, unknown 115.2
1996 Male, age 80, right hemisphere 113.5
2646 Male, age 61, right hemisphere 112.4
2395 Male, age 75, both hemispheres 110.5
2567 Female, age 72, unknown 105.1
Globus pallidus, internus
nTPM: 111.3
2287 Male, age 75, right hemisphere 120.0
2483 Female, age 94, right hemisphere 115.0
2778 Female, age 91, both hemispheres 111.8
2037 Male, age 80, right hemisphere 111.6
1818 Male, age 74, unknown 110.5
2111 Female, age 85, right hemisphere 105.2
2566 Female, age 72, unknown 104.9
Nucleus accumbens
nTPM: 110.8
2698 Female, age 72, unknown 123.7
2286 Male, age 75, left hemisphere 114.1
1856 Female, age 91, right hemisphere 113.0
2391 Female, age 94, left hemisphere 111.7
1806 Female, age 85, left hemisphere 108.4
1783 Male, age 74, unknown 107.8
2824 Male, age 61, right hemisphere 104.2
2732 Male, age 80, right hemisphere 103.5
Nucleus basalis of Meynert
nTPM: 111.3
2821 Male, age 75, both hemispheres 116.4
2484 Female, age 94, left hemisphere 109.8
2393 Male, age 80, right hemisphere 109.6
2569 Male, age 61, both hemispheres 109.3
Nucleus of the diagonal band
nTPM: 109.1
2195 Female, age 85, both hemispheres 111.9
2775 Male, age 80, right hemisphere 110.4
1812 Female, age 91, both hemispheres 109.9
1979 Male, age 74, unknown 107.8
2029 Male, age 61, right hemisphere 105.7
Olfactory tubercle
nTPM: 107.1
1846 Male, age 80, right hemisphere 110.7
2856 Male, age 75, right hemisphere 108.4
1998 Female, age 91, both hemispheres 106.7
2487 Female, age 94, left hemisphere 102.5
Putamen
nTPM: 110.7
2482 Female, age 94, left hemisphere 118.3
1838 Male, age 80, right hemisphere 110.1
2489 Female, age 72, unknown 109.8
1829 Male, age 74, unknown 109.6
2647 Male, age 75, left hemisphere 109.5
1937 Female, age 91, right hemisphere 108.9
2466 Female, age 79, unknown 108.5
Septal nuclei
nTPM: 107.0
2629 Female, age 94, right hemisphere 110.6
1960 Male, age 74, unknown 110.5
2199 Male, age 80, right hemisphere 109.3
2031 Female, age 72, unknown 107.0
2059 Female, age 85, both hemispheres 104.7
2009 Female, age 91, both hemispheres 104.6
2394 Male, age 61, left hemisphere 102.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 62.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 57.5
Samples: 246

Max nTPM: 128.1
Min nTPM: 28.6
Std nTPM: 15.8
Median nTPM: 54.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 128.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 116.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 112.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 111.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 106.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 102.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 100.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 99.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 97.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 97.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 60.9
Samples: 246

Max nTPM: 152.9
Min nTPM: 25.9
Std nTPM: 16.0
Median nTPM: 58.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 152.9
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 117.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 116.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 112.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 109.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 100.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 94.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 93.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 93.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 88.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 88.1
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Brain - Putamen (basal ganglia)
Average nTPM: 62.7
Samples: 205

Max nTPM: 119.9
Min nTPM: 23.7
Std nTPM: 14.2
Median nTPM: 60.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 119.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 111.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 103.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 96.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 94.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 93.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 91.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 90.7
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 89.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 89.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 89.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.4
FF:10164-103B2 76 years, female 87.4
Globus pallidus
Scaled Tags Per Million: 117.4
FF:10175-103C4 60 years, female 161.0
FF:10161-103A8 76 years, female 73.8
Nucleus accumbens
Scaled Tags Per Million: 77.4
FF:10037-101F1 23-56 years, mixed 77.4
Putamen
Scaled Tags Per Million: 105.4
FF:10176-103C5 60 years, female 105.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 33.8
Pig sample Sample description nTPM
Caudate
nTPM: 28.6
Samples: 4

Max nTPM: 34.5
Min nTPM: 24.4
Sample A Female 26.2
Sample B Female 29.2
Sample C Male 34.5
Sample D Male 24.4
Putamen
nTPM: 33.8
Samples: 4

Max nTPM: 45.0
Min nTPM: 26.4
Sample A Female 29.3
Sample B Female 26.4
Sample C Male 45.0
Sample D Male 34.5
Septum
nTPM: 27.3
Samples: 4

Max nTPM: 28.6
Min nTPM: 25.9
Sample A Female 28.6
Sample B Female 27.0
Sample C Male 27.5
Sample D Male 25.9
Ventral pallidum
nTPM: 28.8
Samples: 4

Max nTPM: 33.3
Min nTPM: 22.9
Sample A Female 28.0
Sample B Female 30.9
Sample C Male 33.3
Sample D Male 22.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 219.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 210.5
Samples: 4

Max nTPM: 225.7
Min nTPM: 183.1
Sample A Male 213.9
Sample B Male 225.7
Sample C Female 183.1
Sample D Female 219.2
Septum
nTPM: 219.0
Samples: 4

Max nTPM: 248.0
Min nTPM: 192.2
Sample A Male 192.2
Sample B Male 239.8
Sample C Female 248.0
Sample D Female 196.0
Ventral forebrain
nTPM: 211.3
Samples: 4

Max nTPM: 263.7
Min nTPM: 181.3
Sample A Male 182.0
Sample B Male 218.0
Sample C Female 263.7
Sample D Female 181.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
75214950 Antisense, RP_060427_02_B06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

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