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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:234.8 nTPM
HPA:234.8 nTPM
FANTOM5:288.1 Scaled Tags Per Million
Pig:136.5 nTPM
Allen mouse:6.9 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 234.8
Sample id Sample description nTPM
Area postrema
nTPM: 190.8
2306 Male, age 80, both hemispheres 239.7
2799 Male, age 61, both hemispheres 176.2
2054 Male, age 76, both hemispheres 156.5
Cuneate nuclei
nTPM: 171.3
2381 Male, age 80, both hemispheres 182.7
2376 Male, age 61, both hemispheres 168.6
2131 Male, age 76, both hemispheres 162.6
Dorsal medullary reticular nucleus
nTPM: 183.3
2373 Male, age 61, both hemispheres 216.5
2088 Male, age 76, both hemispheres 168.3
2040 Female, age 85, both hemispheres 165.2
Dorsal motor vagal complex
nTPM: 181.1
2797 Male, age 61, both hemispheres 260.9
2643 Male, age 74, both hemispheres 202.8
2185 Male, age 76, both hemispheres 184.6
2807 Female, age 85, both hemispheres 180.2
2000 Male, age 74, unknown 160.8
2844 Male, age 55, unknown 156.9
2813 Female, age 72, unknown 156.3
2133 Female, age 91, both hemispheres 146.7
Gigantocellular reticular nuclei, medullary
nTPM: 166.5
2314 Male, age 61, both hemispheres 239.4
2387 Female, age 91, both hemispheres 173.8
1876 Female, age 85, both hemispheres 166.4
2022 Male, age 76, right hemisphere 153.9
2310 Male, age 80, both hemispheres 146.0
2462 Male, age 74, both hemispheres 119.3
Gigantocellular reticular nuclei, pars
nTPM: 169.3
2336 Male, age 61, both hemispheres 181.9
2706 Male, age 80, both hemispheres 178.4
2330 Male, age 80, both hemispheres 176.5
2084 Female, age 85, both hemispheres 171.7
2168 Male, age 76, both hemispheres 138.0
Inferior olive
nTPM: 234.8
2379 Male, age 80, both hemispheres 261.0
2178 Male, age 61, both hemispheres 249.8
2085 Female, age 85, both hemispheres 237.5
2563 Male, age 74, both hemispheres 229.9
2628 Female, age 91, both hemispheres 196.0
Lateral medullary reticular nucleus
nTPM: 192.1
2374 Male, age 61, both hemispheres 237.6
2852 Male, age 80, both hemispheres 217.4
2190 Female, age 85, both hemispheres 192.4
2804 Female, age 91, both hemispheres 189.3
2044 Male, age 76, both hemispheres 159.3
2305 Male, age 74, both hemispheres 156.7
Medial vestibular nucleus
nTPM: 155.5
2803 Female, age 91, both hemispheres 176.4
2093 Male, age 80, both hemispheres 161.5
2801 Male, age 74, both hemispheres 157.4
2743 Female, age 85, both hemispheres 156.9
2134 Male, age 76, both hemispheres 141.3
2624 Male, age 61, both hemispheres 139.6
Motor hypoglossal nucleus
nTPM: 159.0
2182 Male, age 80, both hemispheres 174.6
2125 Female, age 91, both hemispheres 171.2
2132 Female, age 85, both hemispheres 170.9
2277 Male, age 76, both hemispheres 139.4
2461 Male, age 61, both hemispheres 138.8
Nucleus ambiguus
nTPM: 194.8
2071 Male, age 76, both hemispheres 216.6
2096 Female, age 85, both hemispheres 173.0
Nucleus cuneatus
nTPM: 188.5
2380 Male, age 80, both hemispheres 219.7
2805 Female, age 91, both hemispheres 205.9
2100 Male, age 76, both hemispheres 183.8
2808 Female, age 85, both hemispheres 176.9
2564 Male, age 74, both hemispheres 174.5
2562 Male, age 61, both hemispheres 170.0
Nucleus gracilis
nTPM: 198.3
2382 Male, age 80, both hemispheres 219.9
2299 Female, age 85, both hemispheres 199.5
2627 Male, age 74, both hemispheres 175.6
Nucleus raphe magnus
nTPM: 131.6
2328 Male, age 80, both hemispheres 159.1
2051 Male, age 76, both hemispheres 148.9
2459 Female, age 91, both hemispheres 143.5
2455 Male, age 74, both hemispheres 127.6
2160 Male, age 61, both hemispheres 111.9
2172 Female, age 85, both hemispheres 98.6
Nucleus raphe obscurus
nTPM: 202.1
2845 Female, age 85, midline 209.6
2800 Male, age 61, midline 200.7
2142 Male, age 76, midline 196.0
Nucleus raphe pallidus
nTPM: 158.5
2145 Male, age 76, midline 183.5
2183 Male, age 80, midline 155.2
1924 Male, age 61, midline 136.7
Nucleus tractus solitarii
nTPM: 143.5
2307 Male, age 80, both hemispheres 151.3
2191 Female, age 85, both hemispheres 147.9
2656 Male, age 76, both hemispheres 140.9
2144 Female, age 91, right hemisphere 133.8
Parvicellular reticular nuclei
nTPM: 156.4
2095 Male, age 76, both hemispheres 179.8
2119 Male, age 80, both hemispheres 165.8
2558 Male, age 74, both hemispheres 123.5
Parvicellular reticular nuclei, medullary
nTPM: 166.8
2189 Female, age 91, both hemispheres 170.3
2091 Female, age 85, both hemispheres 167.8
2181 Male, age 80, left hemisphere 162.4
Peritrigeminal nucleus
nTPM: 173.8
2067 Female, age 85, both hemispheres 186.1
2136 Male, age 76, both hemispheres 178.4
2179 Male, age 61, both hemispheres 157.0
Prepositus hypoglossal nucleus
nTPM: 183.8
2086 Male, age 80, both hemispheres 184.5
2855 Female, age 85, right hemisphere 183.1
Spinal trigeminal nucleus, caudal
nTPM: 168.9
2308 Male, age 80, both hemispheres 192.7
2642 Male, age 74, both hemispheres 167.8
2312 Male, age 61, both hemispheres 167.0
2447 Male, age 76, both hemispheres 164.1
2390 Female, age 91, both hemispheres 152.7
Spinal trigeminal nucleus, interpolar
nTPM: 147.9
2389 Female, age 91, both hemispheres 161.4
2033 Male, age 80, both hemispheres 152.7
2386 Female, age 85, both hemispheres 148.6
2625 Male, age 61, both hemispheres 139.1
2066 Male, age 76, right hemisphere 137.6
Spinal vestibular nucleus
nTPM: 178.4
2384 Male, age 74, both hemispheres 201.2
2806 Female, age 85, both hemispheres 193.1
2748 Male, age 76, both hemispheres 188.0
2186 Female, age 91, both hemispheres 169.8
2780 Male, age 80, both hemispheres 165.1
2796 Male, age 61, both hemispheres 153.3
Ventral medullary reticular nucleus
nTPM: 217.6
2372 Male, age 61, both hemispheres 261.8
2060 Male, age 76, both hemispheres 173.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 179.5
2118 Male, age 80, both hemispheres 205.1
2180 Male, age 61, both hemispheres 195.7
2302 Female, age 91, both hemispheres 174.6
2741 Female, age 85, both hemispheres 163.8
1986 Male, age 76, both hemispheres 158.1

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 288.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 288.1
FF:10038-101F2 18-64 years, mixed 387.6
FF:10174-103C3 60 years, female 255.3
FF:10155-103A2 76 years, female 221.3

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 136.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 136.5
Samples: 4

Max nTPM: 157.9
Min nTPM: 116.7
Sample A Female 126.2
Sample B Female 116.7
Sample C Male 157.9
Sample D Male 145.3

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 6.9
74511880 Antisense, RP_051121_04_A01, Mouse strain C57BL/6J (56 days, male) 9.6
68667288 Antisense, RP_050201_02_A02, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.