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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:431.1 nTPM
HPA:431.1 nTPM
GTEx:505.7 nTPM
FANTOM5:211.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 431.1
Sample id Sample description nTPM
Amygdala
nTPM: 429.2
2695 Female, age 67, right hemisphere 444.7
2514 Male, age 75, right hemisphere 429.2
2517 Female, age 94, left hemisphere 426.5
2814 Male, age 76, right hemisphere 426.3
1987 Female, age 91, left hemisphere 419.4
Basal amygdala
nTPM: 427.2
2827 Female, age 67, right hemisphere 454.8
2685 Female, age 94, left hemisphere 430.0
2609 Male, age 75, right hemisphere 427.5
2243 Female, age 91, right hemisphere 419.2
1955 Male, age 76, both hemispheres 416.0
2110 Male, age 80, left hemisphere 415.7
Central amygdala
nTPM: 424.1
2826 Female, age 94, left hemisphere 457.2
2515 Male, age 75, right hemisphere 419.5
2239 Male, age 80, left hemisphere 419.1
2701 Female, age 91, right hemisphere 414.1
1905 Male, age 76, both hemispheres 410.6
Corticomedial amygdala
nTPM: 422.4
2535 Female, age 67, right hemisphere 426.8
2428 Male, age 75, right hemisphere 424.9
2242 Female, age 91, right hemisphere 424.2
2829 Male, age 80, left hemisphere 420.0
2429 Female, age 94, left hemisphere 419.9
2240 Male, age 76, both hemispheres 418.8
Lateral amygdala
nTPM: 431.1
2830 Female, age 67, right hemisphere 464.9
2516 Male, age 75, right hemisphere 435.3
2534 Female, age 94, left hemisphere 429.5
2256 Male, age 80, left hemisphere 424.4
2255 Female, age 91, right hemisphere 420.1
1883 Male, age 76, both hemispheres 412.5
Stria terminalis, bed nucleus
nTPM: 413.6
2201 Male, age 74, unknown 423.3
1974 Female, age 91, both hemispheres 413.1
2486 Female, age 94, both hemispheres 404.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 505.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 505.7
Samples: 152

Max nTPM: 1263.0
Min nTPM: 262.1
Std nTPM: 182.1
Median nTPM: 457.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1263.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1192.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1068.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1035.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1015.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 969.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 946.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 937.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 923.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 893.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 846.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 837.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 815.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 772.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 768.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 757.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 720.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 708.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 701.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 658.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 653.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 647.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 646.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 636.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 636.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 619.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 616.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 605.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 604.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 595.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 593.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 591.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 590.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 580.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 574.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 571.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 563.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 560.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 549.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 544.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 542.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 542.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 536.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 535.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 535.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 526.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 524.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 520.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 518.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 516.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 515.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 510.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 510.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 509.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 507.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 504.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 503.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 500.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 499.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 492.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 490.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 488.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 484.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 483.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 482.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 481.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 480.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 474.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 470.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 468.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 468.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 467.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 467.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 463.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 460.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 459.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 456.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 456.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 453.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 448.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 446.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 446.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 446.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 441.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 441.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 440.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 438.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 434.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 431.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 429.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 429.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 429.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 426.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 425.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 421.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 419.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 418.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 416.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 415.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 415.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 414.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 414.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 413.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 413.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 411.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 411.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 410.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 409.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 408.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 406.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 405.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 404.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 402.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 401.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 398.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 392.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 379.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 376.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 375.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 372.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 370.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 365.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 363.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 362.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 361.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 360.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 360.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 356.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 355.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 354.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 350.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 349.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 349.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 348.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 347.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 347.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 343.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 341.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 339.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 338.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 335.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 335.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 328.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 319.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 306.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 299.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 295.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 289.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 288.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 278.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 262.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 262.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 211.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 211.2
FF:10151-102I7 76 years, female 211.2

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