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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:444.4 nTPM
HPA:444.4 nTPM
GTEx:599.2 nTPM
FANTOM5:236.9 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 444.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 426.2
2565 Male, age 75, midline 436.4
1981 Female, age 72, midline 432.6
2048 Male, age 55, midline 424.4
2194 Female, age 79, both hemispheres 419.4
2816 Male, age 47, midline 418.5
Cervical spinal cord, dorsal horn
nTPM: 432.1
1877 Male, age 55, unknown 442.6
2173 Female, age 72, unknown 442.6
2296 Male, age 66, both hemispheres 440.1
2069 Male, age 47, both hemispheres 436.5
2721 Male, age 90, both hemispheres 417.0
2297 Male, age 75, both hemispheres 414.0
Cervical spinal cord, ventral horn
nTPM: 444.4
2480 Male, age 75, both hemispheres 463.7
2809 Male, age 90, both hemispheres 457.6
2098 Female, age 72, unknown 455.7
2295 Male, age 66, both hemispheres 441.2
2068 Male, age 55, unknown 435.5
2820 Female, age 79, both hemispheres 412.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 599.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 599.2
Samples: 159

Max nTPM: 1056.7
Min nTPM: 279.5
Std nTPM: 153.0
Median nTPM: 585.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1056.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1002.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 987.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 973.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 927.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 914.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 912.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 903.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 872.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 856.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 851.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 851.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 815.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 811.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 810.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 810.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 801.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 788.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 788.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 785.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 778.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 766.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 751.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 751.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 749.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 737.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 733.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 721.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 718.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 717.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 717.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 715.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 709.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 705.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 699.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 696.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 694.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 692.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 692.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 692.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 690.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 685.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 684.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 675.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 673.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 668.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 668.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 666.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 665.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 665.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 663.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 662.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 659.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 655.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 655.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 652.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 649.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 648.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 645.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 640.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 640.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 638.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 636.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 635.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 634.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 633.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 626.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 625.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 625.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 625.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 622.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 620.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 609.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 609.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 607.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 604.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 602.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 593.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 593.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 585.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 583.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 583.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 580.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 579.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 576.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 571.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 571.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 567.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 566.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 561.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 560.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 559.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 552.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 550.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 549.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 548.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 545.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 543.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 542.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 540.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 537.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 537.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 536.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 536.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 533.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 532.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 531.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 528.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 526.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 518.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 514.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 511.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 509.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 509.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 508.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 508.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 507.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 496.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 493.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 489.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 484.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 477.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 470.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 469.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 469.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 468.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 463.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 461.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 460.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 460.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 457.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 456.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 452.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 450.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 446.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 443.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 442.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 442.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 430.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 422.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 418.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 411.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 404.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 403.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 398.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 395.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 388.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 381.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 378.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 376.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 376.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 372.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 367.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 355.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 325.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 318.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 298.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 286.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 279.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 236.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 236.9
FF:10181-103D1 60 years, female 271.3
FF:10159-103A6 76 years, female 202.4

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