MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:430.8 nTPM
HPA:430.8 nTPM
GTEx:516.8 nTPM
FANTOM5:316.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 430.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 426.7
2411 Female, age 72, unknown 433.0
1830 Male, age 51, unknown 430.0
2666 Male, age 74, left hemisphere 429.6
1870 Female, age 42, unknown 428.0
2828 Female, age 72, unknown 427.4
2586 Male, age 75, left hemisphere 425.5
1833 Male, age 53, unknown 425.3
2019 Male, age 18, unknown 423.2
2219 Male, age 76, both hemispheres 422.7
1827 Male, age 72, unknown 422.1
Dorsal raphe nucleus
nTPM: 417.4
2750 Male, age 76, both hemispheres 425.9
2016 Female, age 72, unknown 421.2
1828 Male, age 53, unknown 417.0
2047 Male, age 72, unknown 414.6
2298 Female, age 72, unknown 408.6
Inferior colliculus
nTPM: 425.5
2849 Male, age 72, unknown 434.6
1890 Male, age 53, unknown 426.7
1848 Female, age 42, unknown 425.9
2097 Female, age 72, unknown 414.7
Median raphe nucleus
nTPM: 423.5
2220 Male, age 76, midline 423.5
Pedunculopontine tegmental nucleus
nTPM: 426.3
2338 Male, age 61, both hemispheres 445.4
2334 Male, age 80, both hemispheres 425.1
1921 Female, age 85, both hemispheres 408.5
Periaquaductal grey, anterior
nTPM: 419.1
2502 Female, age 75, unknown 428.6
1795 Male, age 51, unknown 416.5
1947 Male, age 18, unknown 412.3
Periaquaductal grey, dorsal
nTPM: 418.4
1840 Male, age 53, unknown 424.3
2850 Male, age 76, both hemispheres 417.7
2464 Female, age 72, unknown 416.2
1831 Male, age 72, unknown 415.2
Periaquaductal grey, lateral
nTPM: 419.5
2053 Male, age 18, unknown 426.4
2140 Male, age 76, both hemispheres 417.7
2272 Male, age 74, both hemispheres 414.2
Pretectal area
nTPM: 417.6
2407 Male, age 75, both hemispheres 438.8
2825 Male, age 18, unknown 424.0
2224 Female, age 72, unknown 420.6
1815 Male, age 53, unknown 420.4
1817 Female, age 42, unknown 418.9
2316 Male, age 76, right hemisphere 417.5
1816 Male, age 51, unknown 415.4
2007 Male, age 72, unknown 410.6
1944 Female, age 72, unknown 410.1
2667 Female, age 75, unknown 408.9
2273 Male, age 74, both hemispheres 408.0
Red nucleus
nTPM: 430.8
2503 Female, age 72, unknown 440.8
2769 Male, age 72, unknown 438.3
2584 Male, age 75, left hemisphere 436.7
2227 Male, age 72, unknown 435.9
1904 Male, age 53, unknown 434.4
1865 Male, age 51, unknown 434.2
2588 Male, age 74, left hemisphere 432.6
2725 Female, age 75, unknown 427.5
1821 Female, age 72, unknown 425.6
1954 Female, age 42, unknown 423.8
2785 Male, age 18, unknown 422.2
2823 Male, age 76, right hemisphere 417.4
Substantia nigra
nTPM: 428.9
2409 Female, age 72, unknown 447.8
2699 Male, age 18, unknown 442.2
2665 Male, age 74, both hemispheres 439.0
1851 Male, age 51, unknown 435.1
2590 Female, age 75, unknown 431.7
1916 Female, age 42, unknown 422.9
2583 Male, age 75, right hemisphere 421.3
2241 Male, age 72, unknown 418.1
1941 Male, age 53, unknown 415.7
1889 Female, age 72, unknown 414.9
Superior colliculus
nTPM: 424.9
2587 Male, age 74, left hemisphere 441.3
1913 Female, age 42, unknown 435.1
1995 Male, age 72, unknown 433.0
1839 Male, age 51, unknown 426.9
1796 Male, age 53, unknown 424.6
2664 Male, age 75, both hemispheres 423.6
2668 Female, age 75, unknown 423.5
2261 Male, age 18, unknown 416.6
1895 Male, age 76, right hemisphere 412.5
2087 Female, age 72, unknown 412.2
Ventral tegmental area
nTPM: 430.4
2410 Female, age 72, unknown 441.2
2223 Female, age 72, unknown 441.1
1915 Female, age 42, unknown 431.7
2021 Male, age 53, unknown 428.9
2218 Male, age 76, both hemispheres 420.4
1942 Male, age 51, unknown 418.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 516.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 516.8
Samples: 139

Max nTPM: 1127.8
Min nTPM: 207.2
Std nTPM: 169.6
Median nTPM: 504.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1127.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1058.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 990.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 978.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 919.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 916.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 820.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 815.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 807.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 804.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 803.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 316.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 316.3
FF:10158-103A5 76 years, female 316.3

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