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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:976.0 nTPM
HPA:976.0 nTPM
GTEx:922.4 nTPM
FANTOM5:363.9 Scaled Tags Per Million
Mouse:763.7 nTPM
Allen mouse:7.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 976.0
Sample id Sample description nTPM
Amygdala
nTPM: 964.8
2695 Female, age 67, right hemisphere 1006.4
2514 Male, age 75, right hemisphere 973.2
2517 Female, age 94, left hemisphere 957.2
2814 Male, age 76, right hemisphere 947.2
1987 Female, age 91, left hemisphere 940.1
Basal amygdala
nTPM: 946.3
2827 Female, age 67, right hemisphere 1016.5
2609 Male, age 75, right hemisphere 988.6
2110 Male, age 80, left hemisphere 932.1
2685 Female, age 94, left hemisphere 931.4
2243 Female, age 91, right hemisphere 906.1
1955 Male, age 76, both hemispheres 902.8
Central amygdala
nTPM: 963.6
2826 Female, age 94, left hemisphere 1096.2
2515 Male, age 75, right hemisphere 978.1
1905 Male, age 76, both hemispheres 929.1
2239 Male, age 80, left hemisphere 913.5
2701 Female, age 91, right hemisphere 901.3
Corticomedial amygdala
nTPM: 924.9
2428 Male, age 75, right hemisphere 964.6
2829 Male, age 80, left hemisphere 943.5
2535 Female, age 67, right hemisphere 939.8
2429 Female, age 94, left hemisphere 914.3
2242 Female, age 91, right hemisphere 900.6
2240 Male, age 76, both hemispheres 886.4
Lateral amygdala
nTPM: 976.0
2830 Female, age 67, right hemisphere 1080.1
2516 Male, age 75, right hemisphere 1027.7
2534 Female, age 94, left hemisphere 996.8
2256 Male, age 80, left hemisphere 937.3
2255 Female, age 91, right hemisphere 910.5
1883 Male, age 76, both hemispheres 903.4
Stria terminalis, bed nucleus
nTPM: 885.5
1974 Female, age 91, both hemispheres 906.8
2201 Male, age 74, unknown 877.7
2486 Female, age 94, both hemispheres 872.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 922.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 922.4
Samples: 152

Max nTPM: 2866.6
Min nTPM: 439.2
Std nTPM: 349.5
Median nTPM: 849.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2866.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2114.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1982.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1958.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1927.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1917.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1691.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1672.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1529.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1400.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1388.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1363.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1352.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1332.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1323.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1294.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1289.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1232.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1221.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1207.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1205.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1196.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1190.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1182.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1171.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1162.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1160.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1152.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1126.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1125.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1125.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1124.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1112.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1074.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1062.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1051.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1044.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1044.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1033.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1032.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1031.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1030.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1030.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1024.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1007.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1007.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 999.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 980.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 966.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 963.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 957.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 957.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 948.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 935.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 934.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 933.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 932.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 925.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 920.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 919.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 915.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 913.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 910.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 892.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 889.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 881.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 880.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 879.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 878.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 876.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 874.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 874.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 868.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 864.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 859.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 851.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 846.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 846.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 839.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 838.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 833.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 833.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 833.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 831.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 829.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 825.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 819.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 815.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 814.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 813.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 804.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 783.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 781.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 781.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 767.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 766.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 763.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 755.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 754.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 753.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 749.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 748.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 735.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 725.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 720.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 718.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 710.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 708.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 705.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 703.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 701.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 700.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 694.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 693.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 688.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 687.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 679.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 678.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 678.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 672.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 659.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 658.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 657.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 650.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 648.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 647.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 647.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 646.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 645.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 643.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 641.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 637.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 625.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 625.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 616.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 592.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 592.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 591.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 582.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 576.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 572.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 550.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 549.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 549.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 539.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 533.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 522.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 503.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 493.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 492.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 484.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 439.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 363.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 363.9
FF:10151-102I7 76 years, female 363.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 763.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 763.7
Samples: 4

Max nTPM: 825.3
Min nTPM: 715.9
Sample A Male 715.9
Sample B Male 781.1
Sample C Female 825.3
Sample D Female 732.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
74580990 Antisense, RP_060215_02_C09, Mouse strain C57BL/6J (56 days, male) 7.3

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