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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1010.2 nTPM
HPA:1010.2 nTPM
GTEx:764.3 nTPM
FANTOM5:358.3 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1010.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 963.7
1981 Female, age 72, midline 1015.1
2565 Male, age 75, midline 1001.2
2194 Female, age 79, both hemispheres 939.8
2048 Male, age 55, midline 939.6
2816 Male, age 47, midline 922.6
Cervical spinal cord, dorsal horn
nTPM: 966.0
2173 Female, age 72, unknown 1032.0
2296 Male, age 66, both hemispheres 1005.9
2069 Male, age 47, both hemispheres 1000.9
1877 Male, age 55, unknown 964.3
2297 Male, age 75, both hemispheres 903.5
2721 Male, age 90, both hemispheres 889.5
Cervical spinal cord, ventral horn
nTPM: 1010.2
2480 Male, age 75, both hemispheres 1086.6
2809 Male, age 90, both hemispheres 1082.6
2098 Female, age 72, unknown 1044.4
2295 Male, age 66, both hemispheres 977.3
2068 Male, age 55, unknown 967.1
2820 Female, age 79, both hemispheres 902.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 764.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 764.3
Samples: 159

Max nTPM: 1282.2
Min nTPM: 238.0
Std nTPM: 204.3
Median nTPM: 732.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1282.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1277.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1228.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1220.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1201.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1200.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1184.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1173.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1160.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1153.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1116.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1109.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1101.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1089.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1087.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1087.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1079.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1071.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1059.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1047.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1036.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 999.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 995.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 994.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 994.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 979.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 976.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 954.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 945.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 944.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 943.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 939.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 935.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 931.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 925.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 912.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 910.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 893.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 892.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 883.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 883.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 882.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 875.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 867.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 866.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 865.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 856.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 854.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 853.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 853.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 840.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 833.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 829.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 829.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 823.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 820.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 817.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 816.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 813.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 801.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 796.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 786.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 784.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 782.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 781.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 780.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 772.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 759.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 758.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 755.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 751.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 751.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 750.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 749.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 741.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 739.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 737.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 736.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 735.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 732.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 732.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 725.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 724.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 721.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 718.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 716.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 711.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 710.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 710.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 709.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 700.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 690.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 685.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 681.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 679.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 677.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 674.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 671.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 670.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 666.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 664.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 664.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 663.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 662.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 661.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 656.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 648.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 647.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 647.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 647.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 646.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 640.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 635.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 633.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 628.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 625.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 625.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 623.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 620.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 618.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 616.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 614.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 611.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 610.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 607.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 605.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 602.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 597.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 595.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 594.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 587.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 587.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 586.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 574.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 571.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 553.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 547.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 545.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 544.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 542.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 542.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 542.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 541.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 531.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 527.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 519.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 517.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 508.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 501.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 497.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 494.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 486.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 477.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 466.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 431.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 423.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 394.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 364.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 238.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 358.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 358.3
FF:10181-103D1 60 years, female 383.4
FF:10159-103A6 76 years, female 333.3

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