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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:228.2 nTPM
GTEx:228.2 nTPM
FANTOM5:507.9 Scaled Tags Per Million
Mouse:802.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 228.2
Samples: 105

Max nTPM: 411.4
Min nTPM: 49.5
Std nTPM: 71.0
Median nTPM:
353_1 82 years, female 411.4
352_1 62 years, male 397.4
356_1 87 years, female 388.8
319_1 81 years, male 365.3
218_1 71 years, female 365.2
163_1 78 years, male 364.4
452_1 88 years, female 363.6
351_1 91 years, male 358.1
321_1 62 years, female 345.1
354_1 81 years, female 341.5
320_1 89 years, female 341.4
355_1 70 years, female 336.4
350_1 84 years, female 321.3
377_1 82 years, female 320.9
17_1 71 years, male 300.9
386_1 76 years, male 296.6
177_1 74 years, male 289.6
322_1 76 years, male 286.0
295_1 61 years, female 282.5
349_1 83 years, male 275.7
2_1 77 years, female 272.7
506_1 65 years, male 267.9
394_1 75 years, female 265.6
4_1 88 years, female 262.3
172_1 72 years, female 261.6
376_1 75 years, female 260.2
189_1 76 years, male 260.1
246_1 77 years, male 258.9
173_1 67 years, male 257.7
293_1 68 years, female 257.6
243_1 75 years, male 255.2
35_1 74 years, female 250.6
447_1 81 years, male 250.4
379_1 60 years, male 249.0
335_1 73 years, female 241.3
406_1 79 years, male 241.2
286_1 68 years, female 241.0
6_1 73 years, female 238.3
503_1 68 years, male 237.5
389_1 86 years, female 236.0
404_1 82 years, female 235.8
251_1 78 years, male 235.6
318_1 68 years, male 235.4
153_1 70 years, female 235.3
292_1 71 years, male 233.3
317_1 60 years, male 230.9
526_1 61 years, male 229.0
266_1 85 years, male 228.9
375_1 74 years, female 227.8
120_1 70 years, female 227.5
316_1 62 years, male 226.5
137_1 83 years, male 226.3
109_1 81 years, female 225.3
41_1 94 years, female 225.1
384_1 83 years, male 225.1
311_1 78 years, male 224.1
425_1 59 years, female 223.8
237_1 82 years, male 221.2
264_1 73 years, female 219.3
139_1 64 years, female 218.5
405_1 91 years, male 218.2
126_1 63 years, male 216.9
396_1 62 years, male 214.8
347_1 72 years, male 214.7
517_1 88 years, male 214.6
99_1 64 years, male 214.0
115_1 83 years, male 208.9
518_1 75 years, female 206.7
307_1 66 years, female 204.9
265_1 87 years, male 204.8
480_1 63 years, male 204.4
145_1 84 years, male 202.8
288_1 66 years, female 199.6
468_1 89 years, male 198.7
229_1 69 years, female 198.1
254_1 77 years, female 196.0
313_1 79 years, female 192.9
291_1 76 years, male 192.8
18_1 88 years, male 192.5
119_1 70 years, female 188.4
499_1 55 years, female 187.0
348_1 84 years, male 183.2
315_1 62 years, female 179.6
324_1 76 years, male 172.7
495_1 57 years, female 171.8
117_1 61 years, male 171.0
314_1 67 years, male 170.7
142_1 61 years, female 170.5
308_1 70 years, female 168.8
9_1 66 years, female 166.3
81_1 67 years, male 160.8
217_1 76 years, male 154.9
42_1 85 years, male 153.8
414_1 84 years, female 136.3
89_1 63 years, male 133.4
162_1 79 years, female 131.5
415_1 77 years, female 127.1
32_1 67 years, male 126.1
43_1 64 years, female 123.0
466_1 57 years, female 120.9
501_1 88 years, male 120.4
149_1 88 years, male 102.2
413_1 59 years, female 70.6
491_1 89 years, female 50.4
490_1 67 years, female 49.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 507.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 507.9
FF:10030-101E3 24-65 years, mixed 507.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 802.8
Mouse sample Sample description nTPM
Retina
nTPM: 802.8
Samples: 4

Max nTPM: 1307.2
Min nTPM: 505.5
Sample A Male 759.4
Sample B Male 639.1
Sample C Female 1307.2
Sample D Female 505.5

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.