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TMEM219
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  • TMEM219
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:234.5 nTPM
HPA:234.5 nTPM
GTEx:188.0 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Mouse:25.0 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA059185
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 234.5
Sample id Sample description nTPM
Hippocampus
nTPM: 233.1
1898 Male, age 80, left hemisphere 237.7
2529 Female, age 94, left hemisphere 235.9
1855 Male, age 76, left hemisphere 233.4
2621 Female, age 67, right hemisphere 232.8
2148 Female, age 91, left hemisphere 231.5
1911 Female, age 85, right hemisphere 227.5
Dentate gyrus
nTPM: 229.2
2530 Female, age 94, left hemisphere 240.9
2528 Male, age 74, both hemispheres 230.0
2010 Male, age 76, both hemispheres 229.1
2531 Female, age 67, both hemispheres 227.4
2246 Female, age 85, both hemispheres 226.8
1927 Female, age 91, both hemispheres 221.2
Entorhinal gyrus
nTPM: 234.5
2117 Female, age 91, right hemisphere 239.0
2686 Male, age 75, right hemisphere 238.4
2764 Male, age 80, right hemisphere 235.2
2613 Female, age 94, left hemisphere 232.2
1787 Male, age 76, left hemisphere 232.0
1938 Female, age 85, left hemisphere 230.2
Hippocampus, CA1
nTPM: 229.0
2082 Female, age 91, right hemisphere 231.4
2749 Male, age 80, left hemisphere 231.1
2527 Male, age 74, both hemispheres 229.7
1873 Female, age 85, both hemispheres 228.9
2045 Male, age 76, both hemispheres 224.0
Hippocampus, CA2
nTPM: 230.6
1963 Male, age 80, left hemisphere 238.5
2113 Female, age 91, right hemisphere 232.4
2437 Female, age 94, left hemisphere 231.1
1940 Female, age 85, left hemisphere 229.5
1892 Male, age 76, both hemispheres 226.3
2249 Male, age 74, both hemispheres 226.0
Hippocampus, CA3
nTPM: 230.0
2861 Female, age 67, both hemispheres 242.4
2137 Male, age 80, left hemisphere 229.2
1891 Female, age 85, both hemispheres 228.7
2436 Male, age 74, both hemispheres 228.7
1867 Male, age 76, both hemispheres 228.4
2620 Female, age 94, left hemisphere 222.4
Parahippocampal cortex
nTPM: 228.8
2018 Male, age 76, both hemispheres 233.0
2692 Male, age 74, both hemispheres 232.3
2622 Female, age 67, right hemisphere 230.8
2532 Female, age 72, left hemisphere 229.6
1933 Female, age 85, both hemispheres 228.8
1850 Male, age 80, both hemispheres 228.4
2245 Female, age 91, both hemispheres 228.2
1990 Female, age 91, right hemisphere 227.5
2250 Female, age 67, right hemisphere 225.4
2693 Female, age 94, both hemispheres 223.5
Perirhinal gyrus
nTPM: 228.0
1847 Female, age 91, left hemisphere 230.7
1794 Male, age 80, right hemisphere 228.6
1841 Female, age 85, right hemisphere 228.4
2521 Female, age 94, right hemisphere 226.8
2848 Male, age 76, right hemisphere 225.2
Subiculum
nTPM: 230.3
2619 Male, age 74, both hemispheres 235.0
1977 Female, age 85, both hemispheres 231.9
2042 Male, age 76, both hemispheres 231.3
2729 Female, age 91, right hemisphere 229.7
1901 Male, age 80, both hemispheres 228.4
2438 Female, age 94, left hemisphere 225.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 188.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 188.0
Samples: 197

Max nTPM: 355.3
Min nTPM: 90.6
Std nTPM: 50.4
Median nTPM: 180.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 355.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 327.9
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 327.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 324.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 308.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 305.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 303.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 301.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 299.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 283.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 282.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 277.3
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 266.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 264.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 263.7
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 262.2
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 260.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 259.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 259.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 254.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 253.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 251.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 250.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 245.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 245.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 244.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 244.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 243.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 243.0
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 240.4
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 240.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 236.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 233.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 233.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 231.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 230.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 230.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 229.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 229.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 229.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 227.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 224.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 223.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 223.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 222.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 222.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 221.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 220.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 220.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 218.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 218.3
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 217.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 214.6
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 214.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 213.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 212.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 212.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 212.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 212.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 211.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 210.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 209.5
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 209.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 208.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 206.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 206.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 205.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 204.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 204.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 202.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 201.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 200.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 199.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 198.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 198.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 196.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 196.4
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 195.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 195.1
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 194.4
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 193.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 193.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 192.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 192.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 192.4
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 192.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 189.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 189.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 189.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 188.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 186.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 185.1
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 184.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 183.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 182.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 181.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 180.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 180.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 180.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 178.8
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 178.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 177.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 177.0
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 176.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 176.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 176.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 176.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 175.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 174.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 174.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 174.0
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 173.4
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 171.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 169.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 169.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 169.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 167.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 167.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 167.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 167.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 167.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 167.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 166.8
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 166.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 164.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 164.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 164.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 163.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 163.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 162.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 162.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 162.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 162.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 161.7
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 161.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 160.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 159.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 158.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 157.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 157.5
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 156.7
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 155.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 152.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 152.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 152.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 152.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 152.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 150.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 150.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 148.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 148.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 148.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 147.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 147.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 146.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 145.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 144.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 142.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 142.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 141.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 141.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 141.1
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 139.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 139.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 139.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 138.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 138.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 138.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 138.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 138.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 138.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 137.6
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 135.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 131.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 130.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 129.6
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 128.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 128.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 127.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 127.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 127.2
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 126.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 126.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 125.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 123.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 122.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 118.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 116.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 114.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 113.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 113.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 108.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 100.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 100.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 99.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 97.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 90.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.4
FF:10153-102I9 76 years, female 34.3
FF:10169-103B7 60 years, female 32.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 25.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.3
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.8
Sample A Male 22.8
Sample B Male 24.7
Sample C Female 28.9
Sample D Female 20.8
Hippocampal formation
nTPM: 25.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.6
Sample A Male 27.7
Sample B Male 22.6
Sample C Female 24.6
Sample D Female 25.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68080705 Antisense, RP_040929_01_G04, Mouse strain C57BL/6J (56 days, male) 0.2

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