MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:244.6 nTPM
HPA:244.6 nTPM
GTEx:218.4 nTPM
FANTOM5:43.6 Scaled Tags Per Million
Mouse:22.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 244.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 242.3
2586 Male, age 75, left hemisphere 263.6
2828 Female, age 72, unknown 251.6
2411 Female, age 72, unknown 243.3
1870 Female, age 42, unknown 243.1
2666 Male, age 74, left hemisphere 242.5
1833 Male, age 53, unknown 238.1
2019 Male, age 18, unknown 237.6
1830 Male, age 51, unknown 237.2
1827 Male, age 72, unknown 237.1
2219 Male, age 76, both hemispheres 229.0
Dorsal raphe nucleus
nTPM: 240.8
2750 Male, age 76, both hemispheres 243.8
2016 Female, age 72, unknown 241.8
1828 Male, age 53, unknown 241.6
2047 Male, age 72, unknown 238.6
2298 Female, age 72, unknown 238.3
Inferior colliculus
nTPM: 233.9
2097 Female, age 72, unknown 234.7
1890 Male, age 53, unknown 234.3
2849 Male, age 72, unknown 233.6
1848 Female, age 42, unknown 232.8
Median raphe nucleus
nTPM: 237.3
2220 Male, age 76, midline 237.3
Pedunculopontine tegmental nucleus
nTPM: 231.9
2334 Male, age 80, both hemispheres 234.7
2338 Male, age 61, both hemispheres 230.9
1921 Female, age 85, both hemispheres 230.1
Periaquaductal grey, anterior
nTPM: 240.0
2502 Female, age 75, unknown 245.0
1795 Male, age 51, unknown 239.3
1947 Male, age 18, unknown 235.7
Periaquaductal grey, dorsal
nTPM: 235.7
1840 Male, age 53, unknown 238.6
2464 Female, age 72, unknown 236.8
1831 Male, age 72, unknown 235.3
2850 Male, age 76, both hemispheres 232.0
Periaquaductal grey, lateral
nTPM: 234.1
2053 Male, age 18, unknown 239.2
2140 Male, age 76, both hemispheres 235.2
2272 Male, age 74, both hemispheres 228.1
Pretectal area
nTPM: 233.5
2825 Male, age 18, unknown 241.1
1817 Female, age 42, unknown 237.1
1815 Male, age 53, unknown 235.4
2007 Male, age 72, unknown 235.4
2407 Male, age 75, both hemispheres 235.2
2667 Female, age 75, unknown 233.6
2316 Male, age 76, right hemisphere 233.0
1816 Male, age 51, unknown 231.9
2224 Female, age 72, unknown 229.9
1944 Female, age 72, unknown 228.2
2273 Male, age 74, both hemispheres 227.4
Red nucleus
nTPM: 244.6
2769 Male, age 72, unknown 250.3
1904 Male, age 53, unknown 247.8
2503 Female, age 72, unknown 247.8
1954 Female, age 42, unknown 246.8
2588 Male, age 74, left hemisphere 246.7
2227 Male, age 72, unknown 246.6
1865 Male, age 51, unknown 246.5
2584 Male, age 75, left hemisphere 245.0
1821 Female, age 72, unknown 244.5
2823 Male, age 76, right hemisphere 239.7
2785 Male, age 18, unknown 238.5
2725 Female, age 75, unknown 235.4
Substantia nigra
nTPM: 242.5
1851 Male, age 51, unknown 252.2
2665 Male, age 74, both hemispheres 251.6
2583 Male, age 75, right hemisphere 249.5
2699 Male, age 18, unknown 245.4
2590 Female, age 75, unknown 244.7
1916 Female, age 42, unknown 241.3
1941 Male, age 53, unknown 237.3
2241 Male, age 72, unknown 236.2
1889 Female, age 72, unknown 234.1
2409 Female, age 72, unknown 232.9
Superior colliculus
nTPM: 239.4
2664 Male, age 75, both hemispheres 255.2
1995 Male, age 72, unknown 243.1
1913 Female, age 42, unknown 242.2
2668 Female, age 75, unknown 240.4
1796 Male, age 53, unknown 238.0
2587 Male, age 74, left hemisphere 237.5
1839 Male, age 51, unknown 236.8
2261 Male, age 18, unknown 236.3
2087 Female, age 72, unknown 232.8
1895 Male, age 76, right hemisphere 232.1
Ventral tegmental area
nTPM: 243.4
1915 Female, age 42, unknown 249.4
2410 Female, age 72, unknown 246.4
2223 Female, age 72, unknown 245.3
2021 Male, age 53, unknown 242.5
1942 Male, age 51, unknown 241.5
2218 Male, age 76, both hemispheres 235.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 218.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 218.4
Samples: 139

Max nTPM: 607.6
Min nTPM: 97.4
Std nTPM: 76.9
Median nTPM: 199.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 607.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 499.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 438.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 392.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 392.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 382.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 359.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 347.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 345.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 341.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 332.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.6
FF:10158-103A5 76 years, female 43.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.2
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.0
Sample A Male 25.4
Sample B Male 21.0
Sample C Female 22.2
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68080705 Antisense, RP_040929_01_G04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.