MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:206.1 nTPM
HPA:206.1 nTPM
GTEx:188.6 nTPM
FANTOM5:241.4 Scaled Tags Per Million
Pig:127.1 nTPM
Mouse:34.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 206.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 144.6
2828 Female, age 72, unknown 185.5
2586 Male, age 75, left hemisphere 161.9
2666 Male, age 74, left hemisphere 148.6
2019 Male, age 18, unknown 146.9
1870 Female, age 42, unknown 142.1
2411 Female, age 72, unknown 140.3
1827 Male, age 72, unknown 139.0
1833 Male, age 53, unknown 136.7
1830 Male, age 51, unknown 131.7
2219 Male, age 76, both hemispheres 113.5
Dorsal raphe nucleus
nTPM: 181.4
2016 Female, age 72, unknown 204.8
1828 Male, age 53, unknown 199.3
2298 Female, age 72, unknown 198.5
2047 Male, age 72, unknown 168.8
2750 Male, age 76, both hemispheres 135.6
Inferior colliculus
nTPM: 139.7
2097 Female, age 72, unknown 160.8
2849 Male, age 72, unknown 135.4
1890 Male, age 53, unknown 132.2
1848 Female, age 42, unknown 130.5
Median raphe nucleus
nTPM: 147.7
2220 Male, age 76, midline 147.7
Pedunculopontine tegmental nucleus
nTPM: 137.0
2334 Male, age 80, both hemispheres 145.5
1921 Female, age 85, both hemispheres 137.5
2338 Male, age 61, both hemispheres 128.0
Periaquaductal grey, anterior
nTPM: 153.2
1795 Male, age 51, unknown 177.2
2502 Female, age 75, unknown 146.0
1947 Male, age 18, unknown 136.5
Periaquaductal grey, dorsal
nTPM: 182.5
2850 Male, age 76, both hemispheres 210.6
1840 Male, age 53, unknown 185.5
1831 Male, age 72, unknown 178.8
2464 Female, age 72, unknown 155.0
Periaquaductal grey, lateral
nTPM: 206.1
2140 Male, age 76, both hemispheres 216.2
2272 Male, age 74, both hemispheres 206.4
2053 Male, age 18, unknown 195.6
Pretectal area
nTPM: 172.4
2273 Male, age 74, both hemispheres 281.9
2224 Female, age 72, unknown 190.2
1944 Female, age 72, unknown 179.9
2667 Female, age 75, unknown 170.6
2316 Male, age 76, right hemisphere 162.3
1816 Male, age 51, unknown 160.3
2825 Male, age 18, unknown 158.9
1815 Male, age 53, unknown 157.5
2407 Male, age 75, both hemispheres 155.6
1817 Female, age 42, unknown 147.5
2007 Male, age 72, unknown 131.3
Red nucleus
nTPM: 147.2
2725 Female, age 75, unknown 188.7
2503 Female, age 72, unknown 158.8
1821 Female, age 72, unknown 151.3
2769 Male, age 72, unknown 149.7
2227 Male, age 72, unknown 148.0
2785 Male, age 18, unknown 145.5
2823 Male, age 76, right hemisphere 145.5
1954 Female, age 42, unknown 142.9
1865 Male, age 51, unknown 142.7
1904 Male, age 53, unknown 139.0
2584 Male, age 75, left hemisphere 130.3
2588 Male, age 74, left hemisphere 123.9
Substantia nigra
nTPM: 175.4
2699 Male, age 18, unknown 207.5
1851 Male, age 51, unknown 201.8
1916 Female, age 42, unknown 196.1
2241 Male, age 72, unknown 190.8
2409 Female, age 72, unknown 175.8
2590 Female, age 75, unknown 167.9
1941 Male, age 53, unknown 166.1
2583 Male, age 75, right hemisphere 157.2
1889 Female, age 72, unknown 153.6
2665 Male, age 74, both hemispheres 136.8
Superior colliculus
nTPM: 164.2
1995 Male, age 72, unknown 208.9
2087 Female, age 72, unknown 182.8
1913 Female, age 42, unknown 179.2
2587 Male, age 74, left hemisphere 171.6
1796 Male, age 53, unknown 170.3
2664 Male, age 75, both hemispheres 167.5
2261 Male, age 18, unknown 162.7
1839 Male, age 51, unknown 142.1
2668 Female, age 75, unknown 133.2
1895 Male, age 76, right hemisphere 124.0
Ventral tegmental area
nTPM: 169.7
1915 Female, age 42, unknown 195.7
2021 Male, age 53, unknown 181.5
2410 Female, age 72, unknown 171.7
1942 Male, age 51, unknown 167.0
2223 Female, age 72, unknown 151.5
2218 Male, age 76, both hemispheres 150.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 188.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.6
Samples: 139

Max nTPM: 467.8
Min nTPM: 53.9
Std nTPM: 75.9
Median nTPM: 174.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 467.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 441.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 391.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 376.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 364.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 352.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 350.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 330.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 322.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 322.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 310.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 241.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 241.4
FF:10158-103A5 76 years, female 241.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 127.1
Pig sample Sample description nTPM
Midbrain
nTPM: 108.8
Samples: 4

Max nTPM: 171.1
Min nTPM: 68.1
Sample A Female 171.1
Sample B Female 69.8
Sample C Male 126.2
Sample D Male 68.1
Periaqueductal gray
nTPM: 56.9
Samples: 3

Max nTPM: 67.5
Min nTPM: 47.9
Sample B Female 55.3
Sample C Male 67.5
Sample D Male 47.9
Substantia nigra
nTPM: 112.9
Samples: 4

Max nTPM: 136.1
Min nTPM: 91.1
Sample A Female 136.1
Sample B Female 91.1
Sample C Male 112.2
Sample D Male 112.2
Superior colliculi
nTPM: 127.1
Samples: 4

Max nTPM: 189.3
Min nTPM: 89.6
Sample A Female 126.9
Sample B Female 102.7
Sample C Male 189.3
Sample D Male 89.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.2
Min nTPM: 32.7
Sample A Male 35.2
Sample B Male 33.1
Sample C Female 32.7
Sample D Female 38.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
77454961 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.9
68302203 Antisense, RP_041130_02_D06, Mouse strain C57BL/6J (56 days, male) 0.8
77866850 Antisense, RP_070129_01_E04, Mouse strain C57BL/6J (56 days, male) 0.5
1181 Antisense, RP_Baylor_103301, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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