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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:211.5 nTPM
HPA:211.5 nTPM
GTEx:149.0 nTPM
FANTOM5:359.7 Scaled Tags Per Million
Pig:193.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 211.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 211.5
1981 Female, age 72, midline 271.9
2048 Male, age 55, midline 229.4
2816 Male, age 47, midline 189.1
2565 Male, age 75, midline 184.8
2194 Female, age 79, both hemispheres 182.1
Cervical spinal cord, dorsal horn
nTPM: 190.7
2173 Female, age 72, unknown 260.7
2296 Male, age 66, both hemispheres 208.1
2069 Male, age 47, both hemispheres 191.6
2721 Male, age 90, both hemispheres 187.9
1877 Male, age 55, unknown 166.8
2297 Male, age 75, both hemispheres 128.8
Cervical spinal cord, ventral horn
nTPM: 205.0
2098 Female, age 72, unknown 374.4
2809 Male, age 90, both hemispheres 219.5
2295 Male, age 66, both hemispheres 204.9
2068 Male, age 55, unknown 149.8
2480 Male, age 75, both hemispheres 149.6
2820 Female, age 79, both hemispheres 132.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 149.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 149.0
Samples: 159

Max nTPM: 644.2
Min nTPM: 21.1
Std nTPM: 85.7
Median nTPM: 130.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 644.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 415.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 391.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 363.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 320.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 316.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 311.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 308.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 277.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 276.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 274.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 270.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 268.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 267.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 266.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 264.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 264.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 263.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 262.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 254.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 249.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 244.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 241.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 231.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 231.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 223.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 220.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 213.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 209.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 209.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 209.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 204.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 203.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 203.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 202.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 201.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 200.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 195.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 192.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 191.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 190.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 186.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 184.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 182.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 182.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 182.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 175.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 174.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 174.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 171.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 170.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 169.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 168.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 167.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 165.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 164.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 162.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 161.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 158.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 158.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 154.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 153.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 150.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 148.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 147.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 146.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 145.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 144.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 140.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 137.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 134.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 133.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 133.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 132.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 132.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 131.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 131.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 130.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 130.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 128.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 126.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 126.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 125.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 123.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 121.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 121.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 120.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 119.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 117.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 117.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 116.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 115.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 114.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 114.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 114.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 113.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 112.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 112.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 112.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 111.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 111.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 107.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 106.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 104.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 104.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 102.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 102.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 102.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 100.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 100.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 100.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 99.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 98.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 98.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 94.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 94.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 92.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 88.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 85.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 83.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 81.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 81.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 78.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 77.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 77.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 76.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 75.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 73.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 72.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 72.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 71.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 71.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 69.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 69.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 65.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 64.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 64.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 60.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 56.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 56.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 56.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 55.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 51.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 50.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 50.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 47.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 44.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 42.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 42.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 39.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 35.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 21.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 21.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 359.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 359.7
FF:10159-103A6 76 years, female 451.7
FF:10181-103D1 60 years, female 267.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 193.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 115.0
Samples: 4

Max nTPM: 125.0
Min nTPM: 107.6
Sample A Female 116.2
Sample B Female 107.6
Sample C Male 111.2
Sample D Male 125.0
Ventral spinal cord
nTPM: 193.7
Samples: 4

Max nTPM: 206.3
Min nTPM: 170.2
Sample A Female 206.3
Sample B Female 200.9
Sample C Male 197.4
Sample D Male 170.2

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