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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:134.9 nTPM
HPA:134.9 nTPM
GTEx:186.6 nTPM
FANTOM5:123.9 Scaled Tags Per Million
Pig:10.8 nTPM
Mouse:714.8 nTPM
Allen mouse:12.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 134.9
Sample id Sample description nTPM
Amygdala
nTPM: 134.9
2814 Male, age 76, right hemisphere 149.3
2514 Male, age 75, right hemisphere 135.3
1987 Female, age 91, left hemisphere 133.9
2517 Female, age 94, left hemisphere 128.2
2695 Female, age 67, right hemisphere 128.0
Basal amygdala
nTPM: 125.4
2110 Male, age 80, left hemisphere 130.9
1955 Male, age 76, both hemispheres 128.3
2609 Male, age 75, right hemisphere 128.1
2685 Female, age 94, left hemisphere 125.1
2243 Female, age 91, right hemisphere 123.8
2827 Female, age 67, right hemisphere 116.1
Central amygdala
nTPM: 132.5
1905 Male, age 76, both hemispheres 147.4
2826 Female, age 94, left hemisphere 136.5
2515 Male, age 75, right hemisphere 130.3
2701 Female, age 91, right hemisphere 124.9
2239 Male, age 80, left hemisphere 123.3
Corticomedial amygdala
nTPM: 128.2
2428 Male, age 75, right hemisphere 137.5
2829 Male, age 80, left hemisphere 136.8
2242 Female, age 91, right hemisphere 128.2
2429 Female, age 94, left hemisphere 126.9
2240 Male, age 76, both hemispheres 123.5
2535 Female, age 67, right hemisphere 116.1
Lateral amygdala
nTPM: 128.8
1883 Male, age 76, both hemispheres 147.7
2516 Male, age 75, right hemisphere 135.6
2534 Female, age 94, left hemisphere 132.2
2255 Female, age 91, right hemisphere 121.8
2256 Male, age 80, left hemisphere 118.1
2830 Female, age 67, right hemisphere 117.5
Stria terminalis, bed nucleus
nTPM: 132.9
1974 Female, age 91, both hemispheres 143.8
2486 Female, age 94, both hemispheres 129.4
2201 Male, age 74, unknown 125.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 186.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 186.6
Samples: 152

Max nTPM: 538.0
Min nTPM: 99.0
Std nTPM: 68.8
Median nTPM: 170.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 538.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 432.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 407.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 398.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 395.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 381.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 350.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 294.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 282.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 282.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 279.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 277.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 276.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 275.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 273.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 268.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 262.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 259.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 250.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 249.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 247.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 247.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 240.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 239.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 238.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 230.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 228.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 227.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 224.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 223.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 220.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 220.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 220.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 219.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 218.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 217.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 215.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 212.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 211.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 209.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 208.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 205.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 204.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 204.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 202.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 201.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 200.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 200.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 199.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 198.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 198.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 195.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 194.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 193.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 193.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 193.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 193.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 192.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 192.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 190.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 189.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 187.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 185.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 185.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 183.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 183.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 182.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 182.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 181.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 178.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 176.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 174.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 174.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 173.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 173.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 169.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 166.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 166.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 165.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 165.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 165.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 165.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 164.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 158.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 155.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 154.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 154.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 153.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 152.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 152.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 151.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 150.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 150.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 150.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 150.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 148.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 148.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 147.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 146.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 146.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 146.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 145.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 145.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 144.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 143.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 143.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 143.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 141.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 140.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 137.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 137.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 137.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 136.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 135.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 134.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 133.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 132.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 132.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 131.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 130.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 128.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 128.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 128.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 127.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 125.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 121.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 120.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 119.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 119.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 118.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 113.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 109.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 108.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 106.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 105.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 105.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 105.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 104.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 104.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 102.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 99.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 123.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 123.9
FF:10151-102I7 76 years, female 123.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 10.8
Pig sample Sample description nTPM
Amygdala
nTPM: 10.8
Samples: 4

Max nTPM: 13.5
Min nTPM: 9.6
Sample A Female 13.5
Sample B Female 9.6
Sample C Male 10.1
Sample D Male 10.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 714.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 714.8
Samples: 4

Max nTPM: 732.4
Min nTPM: 694.0
Sample A Male 720.6
Sample B Male 712.2
Sample C Female 732.4
Sample D Female 694.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.9
69526970 Antisense, RP_050421_02_A07, Mouse strain C57BL/6J (56 days, male) 12.9

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