MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:143.6 nTPM
HPA:143.6 nTPM
GTEx:219.3 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:781.8 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.1
2019 Male, age 18, unknown 154.0
2411 Female, age 72, unknown 147.3
1827 Male, age 72, unknown 141.5
2828 Female, age 72, unknown 134.6
1870 Female, age 42, unknown 132.7
2219 Male, age 76, both hemispheres 131.4
1833 Male, age 53, unknown 129.7
1830 Male, age 51, unknown 126.9
2666 Male, age 74, left hemisphere 126.6
2586 Male, age 75, left hemisphere 126.2
Dorsal raphe nucleus
nTPM: 141.5
2298 Female, age 72, unknown 158.6
1828 Male, age 53, unknown 145.0
2047 Male, age 72, unknown 140.8
2750 Male, age 76, both hemispheres 134.6
2016 Female, age 72, unknown 128.2
Inferior colliculus
nTPM: 138.8
2097 Female, age 72, unknown 158.1
1890 Male, age 53, unknown 140.7
1848 Female, age 42, unknown 132.9
2849 Male, age 72, unknown 123.5
Median raphe nucleus
nTPM: 130.3
2220 Male, age 76, midline 130.3
Pedunculopontine tegmental nucleus
nTPM: 135.7
1921 Female, age 85, both hemispheres 142.4
2334 Male, age 80, both hemispheres 136.3
2338 Male, age 61, both hemispheres 128.3
Periaquaductal grey, anterior
nTPM: 133.6
1947 Male, age 18, unknown 134.9
1795 Male, age 51, unknown 133.1
2502 Female, age 75, unknown 132.8
Periaquaductal grey, dorsal
nTPM: 128.2
1840 Male, age 53, unknown 130.4
1831 Male, age 72, unknown 129.5
2464 Female, age 72, unknown 129.4
2850 Male, age 76, both hemispheres 123.2
Periaquaductal grey, lateral
nTPM: 127.5
2272 Male, age 74, both hemispheres 129.9
2053 Male, age 18, unknown 128.9
2140 Male, age 76, both hemispheres 123.7
Pretectal area
nTPM: 143.6
2007 Male, age 72, unknown 163.6
1816 Male, age 51, unknown 156.6
1944 Female, age 72, unknown 155.4
1817 Female, age 42, unknown 155.1
2667 Female, age 75, unknown 145.5
1815 Male, age 53, unknown 144.6
2273 Male, age 74, both hemispheres 138.3
2224 Female, age 72, unknown 135.5
2316 Male, age 76, right hemisphere 131.1
2407 Male, age 75, both hemispheres 127.0
2825 Male, age 18, unknown 126.9
Red nucleus
nTPM: 134.9
1821 Female, age 72, unknown 151.1
2785 Male, age 18, unknown 140.3
2725 Female, age 75, unknown 139.0
2823 Male, age 76, right hemisphere 137.0
2503 Female, age 72, unknown 136.0
1865 Male, age 51, unknown 132.4
2769 Male, age 72, unknown 132.1
2588 Male, age 74, left hemisphere 132.0
1954 Female, age 42, unknown 131.7
2227 Male, age 72, unknown 131.0
1904 Male, age 53, unknown 129.0
2584 Male, age 75, left hemisphere 126.7
Substantia nigra
nTPM: 143.3
1889 Female, age 72, unknown 157.9
1916 Female, age 42, unknown 155.7
1851 Male, age 51, unknown 152.0
1941 Male, age 53, unknown 151.6
2241 Male, age 72, unknown 147.7
2409 Female, age 72, unknown 138.9
2665 Male, age 74, both hemispheres 138.8
2590 Female, age 75, unknown 131.6
2699 Male, age 18, unknown 129.7
2583 Male, age 75, right hemisphere 128.6
Superior colliculus
nTPM: 134.2
2087 Female, age 72, unknown 148.1
1895 Male, age 76, right hemisphere 141.1
2668 Female, age 75, unknown 137.0
2261 Male, age 18, unknown 136.0
2587 Male, age 74, left hemisphere 134.7
1796 Male, age 53, unknown 133.8
1839 Male, age 51, unknown 129.4
1913 Female, age 42, unknown 128.7
1995 Male, age 72, unknown 127.7
2664 Male, age 75, both hemispheres 125.7
Ventral tegmental area
nTPM: 138.3
2410 Female, age 72, unknown 156.0
1915 Female, age 42, unknown 145.8
2218 Male, age 76, both hemispheres 137.7
1942 Male, age 51, unknown 134.5
2021 Male, age 53, unknown 128.2
2223 Female, age 72, unknown 127.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 219.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 219.3
Samples: 139

Max nTPM: 608.9
Min nTPM: 101.5
Std nTPM: 79.0
Median nTPM: 200.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 608.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 476.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 431.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 421.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 401.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 398.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 393.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 387.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 356.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 329.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 324.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 12.6
Sample C Male 16.5
Sample D Male 15.6
Periaqueductal gray
nTPM: 12.0
Samples: 3

Max nTPM: 13.2
Min nTPM: 10.9
Sample B Female 11.8
Sample C Male 13.2
Sample D Male 10.9
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.3
Sample A Female 16.9
Sample B Female 10.8
Sample C Male 13.6
Sample D Male 10.3
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 20.4
Min nTPM: 13.8
Sample A Female 20.2
Sample B Female 16.4
Sample C Male 20.4
Sample D Male 13.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 781.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 781.8
Samples: 4

Max nTPM: 836.1
Min nTPM: 717.2
Sample A Male 836.1
Sample B Male 795.7
Sample C Female 717.2
Sample D Female 778.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
69526970 Antisense, RP_050421_02_A07, Mouse strain C57BL/6J (56 days, male) 12.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.