BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:103.4 nTPM
HPA:103.4 nTPM
GTEx:173.4 nTPM
FANTOM5:174.8 Scaled Tags Per Million
Pig:91.7 nTPM
Mouse:302.8 nTPM
Allen mouse:9.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001931Antibody CAB026191
Glial cells -Low
Neuronal cells MediumMedium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 103.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 92.9
1857 Female, age 85, left hemisphere 97.0
2290 Female, age 72, unknown 97.0
2288 Male, age 75, left hemisphere 95.2
1781 Male, age 74, unknown 94.8
2846 Female, age 79, unknown 92.6
2481 Female, age 94, left hemisphere 91.6
1854 Male, age 80, left hemisphere 91.0
2289 Male, age 61, right hemisphere 84.1
Claustrum
nTPM: 103.4
2198 Male, age 80, both hemispheres 126.4
2568 Male, age 61, both hemispheres 116.2
2491 Male, age 75, both hemispheres 113.1
2284 Female, age 91, both hemispheres 110.0
2645 Female, age 72, unknown 101.7
1956 Male, age 74, unknown 100.4
2196 Female, age 79, unknown 91.2
2292 Female, age 85, both hemispheres 86.0
2392 Female, age 94, both hemispheres 85.8
Globus pallidus, externus
nTPM: 101.7
2772 Female, age 79, unknown 113.0
2646 Male, age 61, right hemisphere 109.8
1996 Male, age 80, right hemisphere 100.0
2567 Female, age 72, unknown 99.0
2395 Male, age 75, both hemispheres 86.9
Globus pallidus, internus
nTPM: 90.1
2483 Female, age 94, right hemisphere 129.4
2287 Male, age 75, right hemisphere 101.6
1818 Male, age 74, unknown 87.6
2566 Female, age 72, unknown 86.4
2037 Male, age 80, right hemisphere 83.4
2778 Female, age 91, both hemispheres 78.2
2111 Female, age 85, right hemisphere 63.8
Nucleus accumbens
nTPM: 87.8
1783 Male, age 74, unknown 104.5
1856 Female, age 91, right hemisphere 99.9
1806 Female, age 85, left hemisphere 98.3
2286 Male, age 75, left hemisphere 91.6
2824 Male, age 61, right hemisphere 86.8
2698 Female, age 72, unknown 85.3
2391 Female, age 94, left hemisphere 68.8
2732 Male, age 80, right hemisphere 67.2
Nucleus basalis of Meynert
nTPM: 93.6
2569 Male, age 61, both hemispheres 124.1
2484 Female, age 94, left hemisphere 94.6
2393 Male, age 80, right hemisphere 82.3
2821 Male, age 75, both hemispheres 73.3
Nucleus of the diagonal band
nTPM: 102.5
2775 Male, age 80, right hemisphere 123.8
1812 Female, age 91, both hemispheres 108.2
2029 Male, age 61, right hemisphere 106.2
2195 Female, age 85, both hemispheres 99.5
1979 Male, age 74, unknown 74.7
Olfactory tubercle
nTPM: 102.3
1998 Female, age 91, both hemispheres 118.6
1846 Male, age 80, right hemisphere 103.3
2487 Female, age 94, left hemisphere 97.5
2856 Male, age 75, right hemisphere 90.0
Putamen
nTPM: 95.2
2647 Male, age 75, left hemisphere 112.5
2466 Female, age 79, unknown 96.5
1937 Female, age 91, right hemisphere 96.3
1838 Male, age 80, right hemisphere 93.6
1829 Male, age 74, unknown 91.7
2482 Female, age 94, left hemisphere 89.5
2489 Female, age 72, unknown 86.3
Septal nuclei
nTPM: 93.0
1960 Male, age 74, unknown 128.3
2031 Female, age 72, unknown 111.1
2059 Female, age 85, both hemispheres 95.1
2009 Female, age 91, both hemispheres 89.0
2629 Female, age 94, right hemisphere 81.6
2394 Male, age 61, left hemisphere 78.1
2199 Male, age 80, right hemisphere 68.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 173.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 146.0
Samples: 246

Max nTPM: 270.3
Min nTPM: 58.3
Std nTPM: 35.8
Median nTPM: 142.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 270.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 252.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 243.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 241.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 234.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 232.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 227.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 227.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 224.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 222.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 221.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 151.3
Samples: 246

Max nTPM: 278.2
Min nTPM: 46.2
Std nTPM: 35.2
Median nTPM: 152.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 278.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 258.9
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 252.7
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 221.2
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 221.1
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 220.5
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 219.3
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 216.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 216.1
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 213.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 212.5
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Brain - Putamen (basal ganglia)
Average nTPM: 173.4
Samples: 205

Max nTPM: 312.7
Min nTPM: 101.5
Std nTPM: 40.1
Median nTPM: 168.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 312.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 300.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 296.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 288.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 285.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 269.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 263.4
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 258.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 258.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 250.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 249.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 174.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.7
FF:10164-103B2 76 years, female 146.7
Globus pallidus
Scaled Tags Per Million: 114.4
FF:10161-103A8 76 years, female 126.2
FF:10175-103C4 60 years, female 102.6
Nucleus accumbens
Scaled Tags Per Million: 138.5
FF:10037-101F1 23-56 years, mixed 138.5
Putamen
Scaled Tags Per Million: 174.8
FF:10176-103C5 60 years, female 174.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 91.7
Pig sample Sample description nTPM
Caudate
nTPM: 88.7
Samples: 4

Max nTPM: 100.1
Min nTPM: 72.5
Sample A Female 72.5
Sample B Female 99.5
Sample C Male 100.1
Sample D Male 82.7
Putamen
nTPM: 91.7
Samples: 4

Max nTPM: 111.5
Min nTPM: 76.9
Sample A Female 89.6
Sample B Female 76.9
Sample C Male 111.5
Sample D Male 88.7
Septum
nTPM: 83.6
Samples: 4

Max nTPM: 90.3
Min nTPM: 76.4
Sample A Female 90.3
Sample B Female 86.1
Sample C Male 81.7
Sample D Male 76.4
Ventral pallidum
nTPM: 88.6
Samples: 4

Max nTPM: 99.5
Min nTPM: 79.2
Sample A Female 79.2
Sample B Female 95.7
Sample C Male 99.5
Sample D Male 79.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 302.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 302.8
Samples: 4

Max nTPM: 354.1
Min nTPM: 265.4
Sample A Male 315.9
Sample B Male 354.1
Sample C Female 275.9
Sample D Female 265.4
Septum
nTPM: 252.4
Samples: 4

Max nTPM: 273.9
Min nTPM: 233.1
Sample A Male 273.9
Sample B Male 236.5
Sample C Female 265.9
Sample D Female 233.1
Ventral forebrain
nTPM: 254.1
Samples: 4

Max nTPM: 279.5
Min nTPM: 221.5
Sample A Male 279.5
Sample B Male 245.7
Sample C Female 269.5
Sample D Female 221.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.5
69783208 Antisense, RP_050505_04_E11, Mouse strain C57BL/6J (56 days, male) 9.5
Pallidum
Expression energy: 8.8
69783208 Antisense, RP_050505_04_E11, Mouse strain C57BL/6J (56 days, male) 8.8

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