MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.8 nTPM
HPA:127.8 nTPM
GTEx:195.0 nTPM
FANTOM5:95.0 Scaled Tags Per Million
Pig:112.4 nTPM
Mouse:287.8 nTPM
Allen mouse:12.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.1
2586 Male, age 75, left hemisphere 145.8
2666 Male, age 74, left hemisphere 129.5
2828 Female, age 72, unknown 114.1
1827 Male, age 72, unknown 106.1
2019 Male, age 18, unknown 96.8
2219 Male, age 76, both hemispheres 96.8
2411 Female, age 72, unknown 96.7
1870 Female, age 42, unknown 86.7
1833 Male, age 53, unknown 80.3
1830 Male, age 51, unknown 77.6
Dorsal raphe nucleus
nTPM: 104.4
2047 Male, age 72, unknown 117.3
1828 Male, age 53, unknown 113.8
2298 Female, age 72, unknown 108.2
2750 Male, age 76, both hemispheres 93.5
2016 Female, age 72, unknown 89.3
Inferior colliculus
nTPM: 89.3
2097 Female, age 72, unknown 102.2
1890 Male, age 53, unknown 93.2
1848 Female, age 42, unknown 84.2
2849 Male, age 72, unknown 77.6
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Pedunculopontine tegmental nucleus
nTPM: 83.0
2334 Male, age 80, both hemispheres 94.5
1921 Female, age 85, both hemispheres 92.1
2338 Male, age 61, both hemispheres 62.5
Periaquaductal grey, anterior
nTPM: 127.3
1947 Male, age 18, unknown 141.1
1795 Male, age 51, unknown 130.6
2502 Female, age 75, unknown 110.1
Periaquaductal grey, dorsal
nTPM: 78.0
1840 Male, age 53, unknown 84.9
2464 Female, age 72, unknown 82.6
1831 Male, age 72, unknown 76.5
2850 Male, age 76, both hemispheres 68.0
Periaquaductal grey, lateral
nTPM: 77.3
2053 Male, age 18, unknown 82.5
2272 Male, age 74, both hemispheres 80.8
2140 Male, age 76, both hemispheres 68.7
Pretectal area
nTPM: 99.7
2007 Male, age 72, unknown 128.0
1816 Male, age 51, unknown 127.0
1817 Female, age 42, unknown 113.7
1944 Female, age 72, unknown 107.9
2667 Female, age 75, unknown 103.4
1815 Male, age 53, unknown 99.3
2825 Male, age 18, unknown 89.1
2224 Female, age 72, unknown 87.7
2407 Male, age 75, both hemispheres 85.3
2273 Male, age 74, both hemispheres 83.9
2316 Male, age 76, right hemisphere 71.6
Red nucleus
nTPM: 98.8
2588 Male, age 74, left hemisphere 120.7
2503 Female, age 72, unknown 117.7
1821 Female, age 72, unknown 110.4
2769 Male, age 72, unknown 100.5
2725 Female, age 75, unknown 99.6
2227 Male, age 72, unknown 99.5
2785 Male, age 18, unknown 95.5
1954 Female, age 42, unknown 93.4
2584 Male, age 75, left hemisphere 92.3
1904 Male, age 53, unknown 90.1
1865 Male, age 51, unknown 85.8
2823 Male, age 76, right hemisphere 80.4
Substantia nigra
nTPM: 127.8
1916 Female, age 42, unknown 181.2
1851 Male, age 51, unknown 154.0
2665 Male, age 74, both hemispheres 144.7
1941 Male, age 53, unknown 142.7
2241 Male, age 72, unknown 118.5
1889 Female, age 72, unknown 114.9
2590 Female, age 75, unknown 110.1
2583 Male, age 75, right hemisphere 108.2
2699 Male, age 18, unknown 105.1
2409 Female, age 72, unknown 98.5
Superior colliculus
nTPM: 95.0
2668 Female, age 75, unknown 114.1
2261 Male, age 18, unknown 110.5
1796 Male, age 53, unknown 110.1
2664 Male, age 75, both hemispheres 107.9
2087 Female, age 72, unknown 103.8
2587 Male, age 74, left hemisphere 97.5
1839 Male, age 51, unknown 84.8
1913 Female, age 42, unknown 75.3
1895 Male, age 76, right hemisphere 73.6
1995 Male, age 72, unknown 72.0
Ventral tegmental area
nTPM: 111.2
1915 Female, age 42, unknown 134.1
2410 Female, age 72, unknown 126.5
2218 Male, age 76, both hemispheres 115.7
1942 Male, age 51, unknown 110.8
2223 Female, age 72, unknown 91.6
2021 Male, age 53, unknown 88.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 195.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 195.0
Samples: 139

Max nTPM: 333.6
Min nTPM: 102.8
Std nTPM: 48.3
Median nTPM: 186.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 333.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 324.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 316.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 311.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 298.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 298.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 296.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 289.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 289.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 279.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 271.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.0
FF:10158-103A5 76 years, female 95.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 112.4
Pig sample Sample description nTPM
Midbrain
nTPM: 112.5
Samples: 4

Max nTPM: 147.3
Min nTPM: 91.0
Sample A Female 147.3
Sample B Female 109.9
Sample C Male 101.6
Sample D Male 91.0
Periaqueductal gray
nTPM: 89.3
Samples: 3

Max nTPM: 96.5
Min nTPM: 82.4
Sample B Female 96.5
Sample C Male 89.0
Sample D Male 82.4
Substantia nigra
nTPM: 112.3
Samples: 4

Max nTPM: 136.7
Min nTPM: 94.1
Sample A Female 136.7
Sample B Female 94.1
Sample C Male 117.4
Sample D Male 100.8
Superior colliculi
nTPM: 100.1
Samples: 4

Max nTPM: 119.1
Min nTPM: 75.6
Sample A Female 119.1
Sample B Female 75.6
Sample C Male 102.0
Sample D Male 103.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 287.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 287.8
Samples: 4

Max nTPM: 321.6
Min nTPM: 273.7
Sample A Male 321.6
Sample B Male 276.2
Sample C Female 279.6
Sample D Female 273.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69783208 Antisense, RP_050505_04_E11, Mouse strain C57BL/6J (56 days, male) 12.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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