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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:156.4 nTPM
GTEx:145.7 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:13.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 156.4
Sample id Sample description nTPM
Putamen
nTPM: 156.4
2647 Male, age 75, left hemisphere 177.1
2489 Female, age 72, unknown 167.0
1829 Male, age 74, unknown 162.0
2482 Female, age 94, left hemisphere 157.2
2466 Female, age 79, unknown 151.0
1937 Female, age 91, right hemisphere 149.5
1838 Male, age 80, right hemisphere 130.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 145.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 145.7
Samples: 205

Max nTPM: 604.4
Min nTPM: 25.0
Std nTPM: 82.6
Median nTPM: 131.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 604.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 512.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 493.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 424.0
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 384.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 346.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 340.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 317.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 313.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 310.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 303.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 301.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 272.1
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 261.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 257.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 246.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 245.8
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 242.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 236.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 232.7
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 232.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 232.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 229.3
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 224.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 223.2
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 220.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 219.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 213.5
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 210.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 209.4
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 207.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 207.4
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 206.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 202.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 198.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 194.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 193.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 192.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 192.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 191.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 190.8
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 189.8
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 188.9
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 186.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 185.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 185.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 184.6
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 184.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 182.2
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 181.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 180.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 179.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 179.5
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 178.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 176.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 176.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 175.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 172.5
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 167.4
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 163.4
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 162.8
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 160.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 160.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 157.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 156.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 154.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 154.6
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 154.2
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 153.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 152.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 151.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 150.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 149.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 148.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 147.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 146.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 146.1
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 145.6
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 145.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 145.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 145.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 145.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 144.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 144.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 143.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 141.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 141.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 140.3
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 140.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 139.2
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 139.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 139.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 138.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 138.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 137.1
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 136.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 136.1
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 134.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 134.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 134.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 132.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 131.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 131.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 130.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 129.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 129.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 127.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 126.4
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 126.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 125.9
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 125.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 125.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 124.9
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 124.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 122.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 120.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 119.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 118.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 113.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 113.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 113.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 112.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 112.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 112.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 112.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 111.2
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 110.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 109.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 109.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 109.1
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 108.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 108.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 107.6
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 106.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 106.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 106.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 105.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 105.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 104.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 103.9
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 103.4
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 103.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 102.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 100.8
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 100.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 99.7
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 99.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 97.2
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 95.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 95.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 95.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 95.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 94.9
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 94.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 94.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 93.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 92.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 91.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 91.4
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 88.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 87.3
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 86.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 86.8
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 86.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 86.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 86.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 83.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 82.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 82.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 81.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 80.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 80.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 80.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 80.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 77.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 76.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 75.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 74.8
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 74.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 74.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 73.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 69.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 69.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 68.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 68.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 67.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 62.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 60.9
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 60.5
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 59.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 58.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 56.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 56.2
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 53.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 51.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 49.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 46.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 45.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 41.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 39.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 39.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 38.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 37.5
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 35.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 25.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 27.8
FF:10176-103C5 60 years, female 27.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.3
Pig sample Sample description nTPM
Putamen
nTPM: 13.3
Samples: 4

Max nTPM: 17.9
Min nTPM: 7.9
Sample A Female 17.9
Sample B Female 7.9
Sample C Male 12.3
Sample D Male 15.1

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