BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:78.6 nTPM
HPA:78.6 nTPM
GTEx:67.9 nTPM
FANTOM5:49.7 Scaled Tags Per Million
Pig:47.1 nTPM
Mouse:96.8 nTPM
Allen mouse:3.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 78.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 78.6
1781 Male, age 74, unknown 81.8
2290 Female, age 72, unknown 80.2
1857 Female, age 85, left hemisphere 78.7
2846 Female, age 79, unknown 78.7
1854 Male, age 80, left hemisphere 78.5
2481 Female, age 94, left hemisphere 77.5
2289 Male, age 61, right hemisphere 77.1
2288 Male, age 75, left hemisphere 76.0
Claustrum
nTPM: 74.7
2198 Male, age 80, both hemispheres 77.7
1956 Male, age 74, unknown 75.4
2491 Male, age 75, both hemispheres 75.4
2645 Female, age 72, unknown 75.3
2196 Female, age 79, unknown 75.0
2284 Female, age 91, both hemispheres 73.7
2568 Male, age 61, both hemispheres 73.7
2292 Female, age 85, both hemispheres 73.5
2392 Female, age 94, both hemispheres 73.1
Globus pallidus, externus
nTPM: 75.1
2772 Female, age 79, unknown 78.3
1996 Male, age 80, right hemisphere 77.0
2395 Male, age 75, both hemispheres 76.9
2646 Male, age 61, right hemisphere 72.1
2567 Female, age 72, unknown 71.2
Globus pallidus, internus
nTPM: 76.7
2287 Male, age 75, right hemisphere 82.6
2778 Female, age 91, both hemispheres 80.7
2483 Female, age 94, right hemisphere 79.1
1818 Male, age 74, unknown 74.5
2037 Male, age 80, right hemisphere 74.5
2111 Female, age 85, right hemisphere 73.3
2566 Female, age 72, unknown 71.9
Nucleus accumbens
nTPM: 78.2
1783 Male, age 74, unknown 83.2
2824 Male, age 61, right hemisphere 82.4
1806 Female, age 85, left hemisphere 79.9
1856 Female, age 91, right hemisphere 79.7
2286 Male, age 75, left hemisphere 77.8
2698 Female, age 72, unknown 76.5
2391 Female, age 94, left hemisphere 74.1
2732 Male, age 80, right hemisphere 72.2
Nucleus basalis of Meynert
nTPM: 75.3
2484 Female, age 94, left hemisphere 78.7
2393 Male, age 80, right hemisphere 75.1
2821 Male, age 75, both hemispheres 74.6
2569 Male, age 61, both hemispheres 73.0
Nucleus of the diagonal band
nTPM: 76.5
2775 Male, age 80, right hemisphere 81.0
1812 Female, age 91, both hemispheres 78.3
2195 Female, age 85, both hemispheres 76.2
2029 Male, age 61, right hemisphere 75.2
1979 Male, age 74, unknown 71.5
Olfactory tubercle
nTPM: 75.3
1846 Male, age 80, right hemisphere 77.3
1998 Female, age 91, both hemispheres 76.9
2487 Female, age 94, left hemisphere 73.8
2856 Male, age 75, right hemisphere 73.2
Putamen
nTPM: 77.6
2466 Female, age 79, unknown 81.6
1838 Male, age 80, right hemisphere 80.4
1937 Female, age 91, right hemisphere 78.0
2482 Female, age 94, left hemisphere 77.2
2489 Female, age 72, unknown 76.0
1829 Male, age 74, unknown 75.5
2647 Male, age 75, left hemisphere 74.2
Septal nuclei
nTPM: 73.9
2031 Female, age 72, unknown 79.2
1960 Male, age 74, unknown 78.8
2009 Female, age 91, both hemispheres 74.3
2629 Female, age 94, right hemisphere 72.9
2059 Female, age 85, both hemispheres 72.0
2394 Male, age 61, left hemisphere 70.2
2199 Male, age 80, right hemisphere 69.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 67.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 61.6
Samples: 246

Max nTPM: 115.5
Min nTPM: 31.9
Std nTPM: 12.6
Median nTPM: 60.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 115.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 98.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 98.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 95.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 91.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 90.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 87.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 87.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 87.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 85.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 67.9
Samples: 246

Max nTPM: 116.1
Min nTPM: 35.3
Std nTPM: 14.1
Median nTPM: 67.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 116.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 115.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 111.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 110.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 106.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 106.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 104.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 97.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 96.1
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 96.0
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 95.3
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Brain - Putamen (basal ganglia)
Average nTPM: 65.8
Samples: 205

Max nTPM: 109.1
Min nTPM: 40.7
Std nTPM: 11.7
Median nTPM: 64.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 109.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 99.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 98.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 92.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 92.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 89.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 89.1
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 88.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 88.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 87.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 86.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.2
FF:10164-103B2 76 years, female 32.2
Globus pallidus
Scaled Tags Per Million: 32.0
FF:10175-103C4 60 years, female 34.7
FF:10161-103A8 76 years, female 29.2
Nucleus accumbens
Scaled Tags Per Million: 49.7
FF:10037-101F1 23-56 years, mixed 49.7
Putamen
Scaled Tags Per Million: 38.6
FF:10176-103C5 60 years, female 38.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 47.1
Pig sample Sample description nTPM
Caudate
nTPM: 40.6
Samples: 4

Max nTPM: 49.5
Min nTPM: 34.3
Sample A Female 35.8
Sample B Female 42.8
Sample C Male 49.5
Sample D Male 34.3
Putamen
nTPM: 47.1
Samples: 4

Max nTPM: 67.9
Min nTPM: 37.2
Sample A Female 38.2
Sample B Female 37.2
Sample C Male 67.9
Sample D Male 45.0
Septum
nTPM: 35.7
Samples: 4

Max nTPM: 40.4
Min nTPM: 31.3
Sample A Female 37.6
Sample B Female 31.3
Sample C Male 40.4
Sample D Male 33.5
Ventral pallidum
nTPM: 35.9
Samples: 4

Max nTPM: 41.6
Min nTPM: 30.2
Sample A Female 30.2
Sample B Female 37.4
Sample C Male 41.6
Sample D Male 34.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 96.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 96.8
Samples: 4

Max nTPM: 101.0
Min nTPM: 92.4
Sample A Male 94.3
Sample B Male 99.4
Sample C Female 92.4
Sample D Female 101.0
Septum
nTPM: 94.7
Samples: 4

Max nTPM: 101.2
Min nTPM: 88.3
Sample A Male 93.2
Sample B Male 101.2
Sample C Female 96.2
Sample D Female 88.3
Ventral forebrain
nTPM: 91.4
Samples: 4

Max nTPM: 100.0
Min nTPM: 82.8
Sample A Male 82.8
Sample B Male 94.2
Sample C Female 100.0
Sample D Female 88.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.3
545095 Antisense, RP_040825_02_C07, Mouse strain C57BL/6J (56 days, male) 3.3
Pallidum
Expression energy: 1.6
545095 Antisense, RP_040825_02_C07, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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