MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:78.6 nTPM
HPA:78.6 nTPM
GTEx:59.8 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:50.3 nTPM
Mouse:90.0 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 78.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.8
2019 Male, age 18, unknown 78.9
2666 Male, age 74, left hemisphere 77.6
2411 Female, age 72, unknown 77.3
2586 Male, age 75, left hemisphere 76.6
1870 Female, age 42, unknown 75.7
2828 Female, age 72, unknown 75.7
1827 Male, age 72, unknown 75.5
1830 Male, age 51, unknown 74.0
1833 Male, age 53, unknown 73.4
2219 Male, age 76, both hemispheres 72.9
Dorsal raphe nucleus
nTPM: 77.0
2750 Male, age 76, both hemispheres 79.2
2298 Female, age 72, unknown 78.4
2047 Male, age 72, unknown 78.3
1828 Male, age 53, unknown 76.8
2016 Female, age 72, unknown 72.3
Inferior colliculus
nTPM: 74.2
2097 Female, age 72, unknown 77.0
1848 Female, age 42, unknown 74.2
1890 Male, age 53, unknown 73.5
2849 Male, age 72, unknown 72.2
Median raphe nucleus
nTPM: 78.1
2220 Male, age 76, midline 78.1
Pedunculopontine tegmental nucleus
nTPM: 77.2
2334 Male, age 80, both hemispheres 80.3
1921 Female, age 85, both hemispheres 75.7
2338 Male, age 61, both hemispheres 75.6
Periaquaductal grey, anterior
nTPM: 77.6
2502 Female, age 75, unknown 79.2
1947 Male, age 18, unknown 77.8
1795 Male, age 51, unknown 75.7
Periaquaductal grey, dorsal
nTPM: 71.9
1840 Male, age 53, unknown 72.9
2464 Female, age 72, unknown 72.7
2850 Male, age 76, both hemispheres 71.8
1831 Male, age 72, unknown 70.0
Periaquaductal grey, lateral
nTPM: 72.4
2140 Male, age 76, both hemispheres 73.1
2053 Male, age 18, unknown 72.5
2272 Male, age 74, both hemispheres 71.5
Pretectal area
nTPM: 75.6
1816 Male, age 51, unknown 79.5
2007 Male, age 72, unknown 79.5
1817 Female, age 42, unknown 79.0
1944 Female, age 72, unknown 77.1
1815 Male, age 53, unknown 75.3
2224 Female, age 72, unknown 75.2
2667 Female, age 75, unknown 74.6
2825 Male, age 18, unknown 74.1
2316 Male, age 76, right hemisphere 73.5
2273 Male, age 74, both hemispheres 72.9
2407 Male, age 75, both hemispheres 71.3
Red nucleus
nTPM: 76.2
1821 Female, age 72, unknown 78.7
2785 Male, age 18, unknown 77.9
1954 Female, age 42, unknown 77.1
2227 Male, age 72, unknown 77.0
2588 Male, age 74, left hemisphere 76.5
1865 Male, age 51, unknown 76.4
2769 Male, age 72, unknown 76.2
2503 Female, age 72, unknown 75.9
2584 Male, age 75, left hemisphere 75.1
2725 Female, age 75, unknown 75.1
1904 Male, age 53, unknown 74.3
2823 Male, age 76, right hemisphere 73.6
Substantia nigra
nTPM: 78.6
1916 Female, age 42, unknown 85.6
1941 Male, age 53, unknown 81.9
1851 Male, age 51, unknown 81.2
2241 Male, age 72, unknown 80.5
2665 Male, age 74, both hemispheres 77.4
1889 Female, age 72, unknown 77.2
2409 Female, age 72, unknown 76.9
2583 Male, age 75, right hemisphere 76.5
2590 Female, age 75, unknown 75.2
2699 Male, age 18, unknown 74.1
Superior colliculus
nTPM: 74.6
2668 Female, age 75, unknown 78.1
1796 Male, age 53, unknown 77.1
2087 Female, age 72, unknown 75.4
1839 Male, age 51, unknown 75.1
2261 Male, age 18, unknown 75.1
2587 Male, age 74, left hemisphere 74.8
1913 Female, age 42, unknown 73.3
1895 Male, age 76, right hemisphere 73.2
2664 Male, age 75, both hemispheres 72.0
1995 Male, age 72, unknown 71.7
Ventral tegmental area
nTPM: 77.4
2410 Female, age 72, unknown 80.4
1915 Female, age 42, unknown 80.1
2223 Female, age 72, unknown 77.6
2218 Male, age 76, both hemispheres 76.9
2021 Male, age 53, unknown 75.7
1942 Male, age 51, unknown 73.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.8
Samples: 139

Max nTPM: 103.3
Min nTPM: 40.5
Std nTPM: 11.0
Median nTPM: 57.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 103.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 91.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 87.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 86.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 86.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 80.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 80.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 79.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 79.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 78.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.3
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 56.8
Min nTPM: 39.5
Sample A Female 56.8
Sample B Female 39.6
Sample C Male 40.4
Sample D Male 39.5
Periaqueductal gray
nTPM: 37.6
Samples: 3

Max nTPM: 42.2
Min nTPM: 34.7
Sample B Female 34.7
Sample C Male 42.2
Sample D Male 35.8
Substantia nigra
nTPM: 43.4
Samples: 4

Max nTPM: 58.7
Min nTPM: 34.2
Sample A Female 58.7
Sample B Female 36.5
Sample C Male 44.2
Sample D Male 34.2
Superior colliculi
nTPM: 50.3
Samples: 4

Max nTPM: 59.0
Min nTPM: 43.6
Sample A Female 59.0
Sample B Female 43.6
Sample C Male 51.5
Sample D Male 47.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.0
Samples: 4

Max nTPM: 94.6
Min nTPM: 83.6
Sample A Male 94.6
Sample B Male 89.4
Sample C Female 83.6
Sample D Female 92.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
545095 Antisense, RP_040825_02_C07, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.