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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:340.5 nTPM
HPA:340.5 nTPM
GTEx:589.4 nTPM
FANTOM5:1665.4 Scaled Tags Per Million
Pig:309.1 nTPM
Mouse:766.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 340.5
Sample id Sample description nTPM
Amygdala
nTPM: 229.6
2517 Female, age 94, left hemisphere 309.7
2814 Male, age 76, right hemisphere 226.0
2514 Male, age 75, right hemisphere 212.1
2695 Female, age 67, right hemisphere 206.4
1987 Female, age 91, left hemisphere 193.9
Basal amygdala
nTPM: 340.5
2827 Female, age 67, right hemisphere 426.5
2685 Female, age 94, left hemisphere 424.2
2110 Male, age 80, left hemisphere 377.9
1955 Male, age 76, both hemispheres 298.7
2609 Male, age 75, right hemisphere 262.3
2243 Female, age 91, right hemisphere 253.6
Central amygdala
nTPM: 290.6
2826 Female, age 94, left hemisphere 495.4
2239 Male, age 80, left hemisphere 323.2
2515 Male, age 75, right hemisphere 238.1
1905 Male, age 76, both hemispheres 205.3
2701 Female, age 91, right hemisphere 190.9
Corticomedial amygdala
nTPM: 302.1
2535 Female, age 67, right hemisphere 399.6
2829 Male, age 80, left hemisphere 378.1
2429 Female, age 94, left hemisphere 299.6
2240 Male, age 76, both hemispheres 284.5
2428 Male, age 75, right hemisphere 242.1
2242 Female, age 91, right hemisphere 208.8
Lateral amygdala
nTPM: 337.3
2534 Female, age 94, left hemisphere 499.0
2256 Male, age 80, left hemisphere 496.6
2830 Female, age 67, right hemisphere 284.7
2516 Male, age 75, right hemisphere 258.4
1883 Male, age 76, both hemispheres 244.6
2255 Female, age 91, right hemisphere 240.2
Stria terminalis, bed nucleus
nTPM: 260.8
2486 Female, age 94, both hemispheres 286.4
1974 Female, age 91, both hemispheres 283.5
2201 Male, age 74, unknown 212.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 589.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 589.4
Samples: 152

Max nTPM: 1785.7
Min nTPM: 79.8
Std nTPM: 290.4
Median nTPM: 529.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1785.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1731.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1563.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1364.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1207.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1168.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1165.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1135.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1094.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1073.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 991.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 983.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 965.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 955.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 945.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 930.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 927.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 918.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 906.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 884.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 877.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 868.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 865.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 863.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 861.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 860.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 845.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 827.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 820.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 791.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 783.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 756.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 754.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 747.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 745.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 742.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 740.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 728.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 718.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 713.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 708.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 697.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 697.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 693.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 682.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 677.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 677.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 672.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 672.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 665.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 664.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 654.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 653.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 651.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 648.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 644.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 643.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 639.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 636.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 633.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 631.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 624.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 624.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 615.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 592.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 588.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 587.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 570.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 569.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 561.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 557.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 541.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 540.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 537.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 537.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 530.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 528.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 526.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 525.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 524.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 520.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 520.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 518.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 511.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 497.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 496.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 494.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 490.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 487.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 485.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 481.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 480.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 480.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 478.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 473.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 469.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 468.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 458.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 455.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 454.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 446.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 443.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 441.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 437.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 421.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 419.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 417.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 415.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 407.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 405.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 401.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 398.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 395.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 390.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 389.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 384.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 378.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 377.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 358.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 346.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 341.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 340.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 340.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 340.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 340.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 338.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 330.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 324.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 320.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 318.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 314.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 308.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 301.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 288.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 276.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 270.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 268.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 264.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 259.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 254.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 245.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 225.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 224.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 218.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 217.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 213.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 204.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 198.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 190.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 79.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1665.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1665.4
FF:10151-102I7 76 years, female 1665.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 309.1
Pig sample Sample description nTPM
Amygdala
nTPM: 309.1
Samples: 4

Max nTPM: 444.9
Min nTPM: 200.8
Sample A Female 444.9
Sample B Female 322.4
Sample C Male 200.8
Sample D Male 268.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 766.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 766.8
Samples: 4

Max nTPM: 1078.4
Min nTPM: 549.8
Sample A Male 549.8
Sample B Male 777.4
Sample C Female 1078.4
Sample D Female 661.7

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