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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:224.8 nTPM
HPA:224.8 nTPM
FANTOM5:431.5 Scaled Tags Per Million
Pig:139.4 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 224.8
Sample id Sample description nTPM
Area postrema
nTPM: 166.0
2054 Male, age 76, both hemispheres 185.7
2306 Male, age 80, both hemispheres 162.5
2799 Male, age 61, both hemispheres 149.8
Cuneate nuclei
nTPM: 204.5
2131 Male, age 76, both hemispheres 228.2
2381 Male, age 80, both hemispheres 209.8
2376 Male, age 61, both hemispheres 175.6
Dorsal medullary reticular nucleus
nTPM: 192.5
2088 Male, age 76, both hemispheres 200.1
2373 Male, age 61, both hemispheres 199.1
2040 Female, age 85, both hemispheres 178.5
Dorsal motor vagal complex
nTPM: 198.5
2133 Female, age 91, both hemispheres 224.2
2000 Male, age 74, unknown 201.7
2813 Female, age 72, unknown 197.6
2844 Male, age 55, unknown 194.6
2797 Male, age 61, both hemispheres 193.9
2807 Female, age 85, both hemispheres 192.4
2643 Male, age 74, both hemispheres 192.3
2185 Male, age 76, both hemispheres 191.3
Gigantocellular reticular nuclei, medullary
nTPM: 194.6
2022 Male, age 76, right hemisphere 230.7
2310 Male, age 80, both hemispheres 199.3
2387 Female, age 91, both hemispheres 198.8
2314 Male, age 61, both hemispheres 186.6
2462 Male, age 74, both hemispheres 176.9
1876 Female, age 85, both hemispheres 175.1
Gigantocellular reticular nuclei, pars
nTPM: 179.2
2336 Male, age 61, both hemispheres 199.5
2084 Female, age 85, both hemispheres 186.0
2168 Male, age 76, both hemispheres 177.2
2330 Male, age 80, both hemispheres 175.2
2706 Male, age 80, both hemispheres 158.2
Inferior olive
nTPM: 173.8
2628 Female, age 91, both hemispheres 193.1
2085 Female, age 85, both hemispheres 180.3
2563 Male, age 74, both hemispheres 176.6
2178 Male, age 61, both hemispheres 165.7
2379 Male, age 80, both hemispheres 153.3
Lateral medullary reticular nucleus
nTPM: 181.6
2305 Male, age 74, both hemispheres 204.4
2804 Female, age 91, both hemispheres 189.3
2374 Male, age 61, both hemispheres 186.4
2190 Female, age 85, both hemispheres 178.2
2044 Male, age 76, both hemispheres 172.4
2852 Male, age 80, both hemispheres 158.5
Medial vestibular nucleus
nTPM: 191.1
2803 Female, age 91, both hemispheres 210.0
2801 Male, age 74, both hemispheres 196.4
2624 Male, age 61, both hemispheres 194.6
2134 Male, age 76, both hemispheres 194.5
2093 Male, age 80, both hemispheres 182.8
2743 Female, age 85, both hemispheres 168.4
Motor hypoglossal nucleus
nTPM: 213.8
2461 Male, age 61, both hemispheres 223.5
2132 Female, age 85, both hemispheres 221.9
2277 Male, age 76, both hemispheres 214.9
2125 Female, age 91, both hemispheres 206.1
2182 Male, age 80, both hemispheres 202.5
Nucleus ambiguus
nTPM: 192.1
2096 Female, age 85, both hemispheres 226.5
2071 Male, age 76, both hemispheres 157.7
Nucleus cuneatus
nTPM: 181.2
2562 Male, age 61, both hemispheres 198.8
2805 Female, age 91, both hemispheres 195.5
2100 Male, age 76, both hemispheres 187.5
2564 Male, age 74, both hemispheres 185.6
2808 Female, age 85, both hemispheres 162.2
2380 Male, age 80, both hemispheres 157.5
Nucleus gracilis
nTPM: 170.0
2627 Male, age 74, both hemispheres 174.9
2299 Female, age 85, both hemispheres 168.4
2382 Male, age 80, both hemispheres 166.7
Nucleus raphe magnus
nTPM: 189.4
2459 Female, age 91, both hemispheres 219.2
2455 Male, age 74, both hemispheres 194.9
2328 Male, age 80, both hemispheres 194.1
2172 Female, age 85, both hemispheres 182.7
2051 Male, age 76, both hemispheres 175.2
2160 Male, age 61, both hemispheres 170.0
Nucleus raphe obscurus
nTPM: 167.2
2800 Male, age 61, midline 175.2
2845 Female, age 85, midline 172.4
2142 Male, age 76, midline 154.0
Nucleus raphe pallidus
nTPM: 165.5
2145 Male, age 76, midline 171.6
2183 Male, age 80, midline 169.8
1924 Male, age 61, midline 155.1
Nucleus tractus solitarii
nTPM: 191.2
2307 Male, age 80, both hemispheres 217.1
2656 Male, age 76, both hemispheres 210.8
2191 Female, age 85, both hemispheres 189.7
2144 Female, age 91, right hemisphere 147.1
Parvicellular reticular nuclei
nTPM: 169.4
2558 Male, age 74, both hemispheres 183.2
2119 Male, age 80, both hemispheres 164.0
2095 Male, age 76, both hemispheres 161.0
Parvicellular reticular nuclei, medullary
nTPM: 203.2
2181 Male, age 80, left hemisphere 207.1
2189 Female, age 91, both hemispheres 205.4
2091 Female, age 85, both hemispheres 197.1
Peritrigeminal nucleus
nTPM: 174.1
2179 Male, age 61, both hemispheres 185.1
2067 Female, age 85, both hemispheres 175.5
2136 Male, age 76, both hemispheres 161.6
Prepositus hypoglossal nucleus
nTPM: 169.4
2855 Female, age 85, right hemisphere 174.7
2086 Male, age 80, both hemispheres 164.2
Spinal trigeminal nucleus, caudal
nTPM: 224.8
2308 Male, age 80, both hemispheres 236.4
2447 Male, age 76, both hemispheres 229.4
2390 Female, age 91, both hemispheres 223.1
2642 Male, age 74, both hemispheres 218.8
2312 Male, age 61, both hemispheres 216.4
Spinal trigeminal nucleus, interpolar
nTPM: 198.1
2386 Female, age 85, both hemispheres 219.3
2389 Female, age 91, both hemispheres 212.5
2625 Male, age 61, both hemispheres 208.0
2033 Male, age 80, both hemispheres 190.6
2066 Male, age 76, right hemisphere 160.0
Spinal vestibular nucleus
nTPM: 200.0
2384 Male, age 74, both hemispheres 214.7
2186 Female, age 91, both hemispheres 212.6
2748 Male, age 76, both hemispheres 200.9
2780 Male, age 80, both hemispheres 192.2
2796 Male, age 61, both hemispheres 192.2
2806 Female, age 85, both hemispheres 187.4
Ventral medullary reticular nucleus
nTPM: 195.5
2060 Male, age 76, both hemispheres 204.2
2372 Male, age 61, both hemispheres 186.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 177.6
2302 Female, age 91, both hemispheres 197.6
2741 Female, age 85, both hemispheres 188.3
2180 Male, age 61, both hemispheres 175.0
1986 Male, age 76, both hemispheres 164.9
2118 Male, age 80, both hemispheres 162.4

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 431.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 431.5
FF:10174-103C3 60 years, female 517.9
FF:10038-101F2 18-64 years, mixed 444.9
FF:10155-103A2 76 years, female 331.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 139.4
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 139.4
Samples: 4

Max nTPM: 204.1
Min nTPM: 115.7
Sample A Female 204.1
Sample B Female 118.8
Sample C Male 115.7
Sample D Male 119.1

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.