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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:226.7 nTPM
HPA:226.7 nTPM
GTEx:157.3 nTPM
FANTOM5:1267.3 Scaled Tags Per Million
Pig:130.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 226.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 170.3
2194 Female, age 79, both hemispheres 195.3
2565 Male, age 75, midline 176.5
1981 Female, age 72, midline 164.1
2816 Male, age 47, midline 158.7
2048 Male, age 55, midline 156.9
Cervical spinal cord, dorsal horn
nTPM: 226.7
2297 Male, age 75, both hemispheres 314.3
1877 Male, age 55, unknown 255.7
2069 Male, age 47, both hemispheres 244.4
2721 Male, age 90, both hemispheres 204.6
2296 Male, age 66, both hemispheres 171.4
2173 Female, age 72, unknown 169.9
Cervical spinal cord, ventral horn
nTPM: 192.4
2480 Male, age 75, both hemispheres 229.6
2295 Male, age 66, both hemispheres 217.4
2820 Female, age 79, both hemispheres 204.9
2068 Male, age 55, unknown 194.7
2809 Male, age 90, both hemispheres 183.5
2098 Female, age 72, unknown 124.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 157.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 157.3
Samples: 159

Max nTPM: 365.3
Min nTPM: 27.6
Std nTPM: 59.7
Median nTPM: 148.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 365.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 331.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 320.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 312.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 312.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 268.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 267.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 266.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 260.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 253.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 253.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 251.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 249.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 239.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 239.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 229.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 229.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 229.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 229.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 226.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 223.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 216.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 216.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 216.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 214.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 213.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 211.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 208.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 205.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 203.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 199.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 198.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 198.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 197.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 195.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 195.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 192.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 191.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 190.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 190.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 189.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 188.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 187.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 187.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 187.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 186.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 186.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 185.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 183.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 183.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 182.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 182.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 181.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 179.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 179.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 178.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 174.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 173.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 173.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 172.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 171.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 170.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 170.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 166.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 165.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 164.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 163.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 160.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 160.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 159.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 158.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 158.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 156.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 153.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 152.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 151.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 151.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 150.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 148.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 148.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 148.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 148.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 148.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 146.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 146.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 142.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 142.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 141.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 140.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 140.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 140.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 139.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 139.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 138.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 137.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 137.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 136.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 136.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 135.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 135.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 134.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 133.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 132.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 131.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 131.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 130.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 129.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 129.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 127.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 126.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 126.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 125.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 123.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 121.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 120.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 120.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 119.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 119.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 115.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 110.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 108.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 107.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 107.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 105.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 104.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 103.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 102.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 102.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 100.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 99.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 96.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 94.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 93.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 92.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 89.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 86.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 83.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 79.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 76.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 76.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 76.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 73.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 72.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 70.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 65.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 65.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 61.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 60.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 51.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 48.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 27.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1267.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1267.3
FF:10181-103D1 60 years, female 1675.3
FF:10159-103A6 76 years, female 859.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 130.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 130.1
Samples: 4

Max nTPM: 204.0
Min nTPM: 61.3
Sample A Female 204.0
Sample B Female 107.6
Sample C Male 61.3
Sample D Male 147.4
Ventral spinal cord
nTPM: 119.4
Samples: 4

Max nTPM: 134.0
Min nTPM: 109.1
Sample A Female 134.0
Sample B Female 113.8
Sample C Male 109.1
Sample D Male 120.7

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