MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:222.4 nTPM
HPA:222.4 nTPM
GTEx:204.2 nTPM
FANTOM5:789.8 Scaled Tags Per Million
Pig:232.7 nTPM
Mouse:184.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 222.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 207.8
2586 Male, age 75, left hemisphere 240.5
1827 Male, age 72, unknown 228.4
2828 Female, age 72, unknown 221.8
2219 Male, age 76, both hemispheres 221.4
1833 Male, age 53, unknown 215.4
2666 Male, age 74, left hemisphere 205.8
1830 Male, age 51, unknown 202.4
2411 Female, age 72, unknown 188.9
1870 Female, age 42, unknown 181.7
2019 Male, age 18, unknown 172.0
Dorsal raphe nucleus
nTPM: 186.7
2750 Male, age 76, both hemispheres 209.8
1828 Male, age 53, unknown 190.5
2047 Male, age 72, unknown 188.7
2298 Female, age 72, unknown 174.4
2016 Female, age 72, unknown 169.9
Inferior colliculus
nTPM: 211.8
2097 Female, age 72, unknown 258.6
2849 Male, age 72, unknown 204.0
1848 Female, age 42, unknown 196.0
1890 Male, age 53, unknown 188.7
Median raphe nucleus
nTPM: 222.4
2220 Male, age 76, midline 222.4
Pedunculopontine tegmental nucleus
nTPM: 191.3
2334 Male, age 80, both hemispheres 208.2
1921 Female, age 85, both hemispheres 191.7
2338 Male, age 61, both hemispheres 173.9
Periaquaductal grey, anterior
nTPM: 196.8
2502 Female, age 75, unknown 218.6
1795 Male, age 51, unknown 192.5
1947 Male, age 18, unknown 179.2
Periaquaductal grey, dorsal
nTPM: 184.3
2464 Female, age 72, unknown 199.1
1831 Male, age 72, unknown 192.6
2850 Male, age 76, both hemispheres 173.6
1840 Male, age 53, unknown 172.0
Periaquaductal grey, lateral
nTPM: 189.5
2053 Male, age 18, unknown 204.6
2272 Male, age 74, both hemispheres 191.5
2140 Male, age 76, both hemispheres 172.4
Pretectal area
nTPM: 213.7
1815 Male, age 53, unknown 259.8
1816 Male, age 51, unknown 259.5
1944 Female, age 72, unknown 242.5
2007 Male, age 72, unknown 231.2
1817 Female, age 42, unknown 222.0
2825 Male, age 18, unknown 202.1
2407 Male, age 75, both hemispheres 198.2
2316 Male, age 76, right hemisphere 186.3
2667 Female, age 75, unknown 186.2
2224 Female, age 72, unknown 186.0
2273 Male, age 74, both hemispheres 176.6
Red nucleus
nTPM: 202.3
2584 Male, age 75, left hemisphere 231.3
2588 Male, age 74, left hemisphere 230.8
2725 Female, age 75, unknown 211.3
1904 Male, age 53, unknown 209.9
2227 Male, age 72, unknown 200.5
2769 Male, age 72, unknown 200.2
2503 Female, age 72, unknown 200.0
2785 Male, age 18, unknown 196.4
1865 Male, age 51, unknown 193.2
1821 Female, age 72, unknown 190.7
1954 Female, age 42, unknown 183.5
2823 Male, age 76, right hemisphere 179.3
Substantia nigra
nTPM: 195.1
1889 Female, age 72, unknown 225.0
2583 Male, age 75, right hemisphere 215.8
2699 Male, age 18, unknown 202.5
2665 Male, age 74, both hemispheres 198.1
2590 Female, age 75, unknown 197.5
1851 Male, age 51, unknown 193.3
2409 Female, age 72, unknown 186.4
1916 Female, age 42, unknown 181.8
1941 Male, age 53, unknown 177.9
2241 Male, age 72, unknown 172.9
Superior colliculus
nTPM: 210.2
2261 Male, age 18, unknown 267.3
1796 Male, age 53, unknown 228.8
2087 Female, age 72, unknown 228.4
1913 Female, age 42, unknown 213.4
1895 Male, age 76, right hemisphere 198.6
2587 Male, age 74, left hemisphere 198.3
2668 Female, age 75, unknown 196.9
1839 Male, age 51, unknown 192.0
2664 Male, age 75, both hemispheres 189.5
1995 Male, age 72, unknown 188.7
Ventral tegmental area
nTPM: 202.4
2223 Female, age 72, unknown 248.2
2218 Male, age 76, both hemispheres 212.1
1915 Female, age 42, unknown 199.6
1942 Male, age 51, unknown 194.1
2410 Female, age 72, unknown 181.4
2021 Male, age 53, unknown 178.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 204.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 204.2
Samples: 139

Max nTPM: 897.3
Min nTPM: 38.5
Std nTPM: 97.5
Median nTPM: 191.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 897.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 489.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 469.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 438.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 399.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 369.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 350.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 344.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 336.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 336.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 322.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 789.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 789.8
FF:10158-103A5 76 years, female 789.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 232.7
Pig sample Sample description nTPM
Midbrain
nTPM: 232.8
Samples: 4

Max nTPM: 440.8
Min nTPM: 139.3
Sample A Female 139.3
Sample B Female 140.0
Sample C Male 210.9
Sample D Male 440.8
Periaqueductal gray
nTPM: 125.8
Samples: 3

Max nTPM: 137.6
Min nTPM: 118.9
Sample B Female 121.0
Sample C Male 137.6
Sample D Male 118.9
Substantia nigra
nTPM: 145.1
Samples: 4

Max nTPM: 172.4
Min nTPM: 114.2
Sample A Female 172.4
Sample B Female 114.2
Sample C Male 159.3
Sample D Male 134.4
Superior colliculi
nTPM: 194.6
Samples: 4

Max nTPM: 274.6
Min nTPM: 76.1
Sample A Female 274.6
Sample B Female 76.1
Sample C Male 224.4
Sample D Male 203.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 184.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 184.9
Samples: 4

Max nTPM: 195.6
Min nTPM: 179.1
Sample A Male 195.6
Sample B Male 179.1
Sample C Female 184.8
Sample D Female 180.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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