MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:76.6 nTPM
FANTOM5:8.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.2
2219 Male, age 76, both hemispheres 30.7
1827 Male, age 72, unknown 8.0
2411 Female, age 72, unknown 6.1
2019 Male, age 18, unknown 3.6
2666 Male, age 74, left hemisphere 3.3
2828 Female, age 72, unknown 0.4
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 2.0
1828 Male, age 53, unknown 9.6
2047 Male, age 72, unknown 0.7
2016 Female, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 9.3
2097 Female, age 72, unknown 18.2
1848 Female, age 42, unknown 10.6
1890 Male, age 53, unknown 7.8
2849 Male, age 72, unknown 0.7
Median raphe nucleus
nTPM: 8.7
2220 Male, age 76, midline 8.7
Pedunculopontine tegmental nucleus
nTPM: 11.5
1921 Female, age 85, both hemispheres 16.8
2338 Male, age 61, both hemispheres 11.0
2334 Male, age 80, both hemispheres 6.7
Periaquaductal grey, anterior
nTPM: 6.4
2502 Female, age 75, unknown 11.9
1947 Male, age 18, unknown 7.3
1795 Male, age 51, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 15.3
1944 Female, age 72, unknown 47.2
1816 Male, age 51, unknown 42.2
1817 Female, age 42, unknown 27.3
2667 Female, age 75, unknown 24.1
2007 Male, age 72, unknown 17.3
1815 Male, age 53, unknown 10.5
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 1.1
1821 Female, age 72, unknown 13.8
2785 Male, age 18, unknown 0.3
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 39.7
1916 Female, age 42, unknown 102.0
1941 Male, age 53, unknown 80.7
2409 Female, age 72, unknown 48.5
1851 Male, age 51, unknown 46.6
2241 Male, age 72, unknown 41.6
1889 Female, age 72, unknown 32.0
2699 Male, age 18, unknown 25.2
2665 Male, age 74, both hemispheres 20.2
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 12.1
2668 Female, age 75, unknown 46.4
2087 Female, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 18.1
2261 Male, age 18, unknown 15.5
1796 Male, age 53, unknown 1.8
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 28.5
2410 Female, age 72, unknown 59.9
2218 Male, age 76, both hemispheres 58.7
1915 Female, age 42, unknown 42.1
1942 Male, age 51, unknown 10.1
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.6
Samples: 139

Max nTPM: 438.0
Min nTPM: 2.6
Std nTPM: 76.8
Median nTPM: 50.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 438.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 360.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 331.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 323.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 254.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 205.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 199.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 198.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 190.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 182.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 180.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.5
FF:10158-103A5 76 years, female 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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