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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
133.779
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:32.2 nTPM
HPA:32.2 nTPM
GTEx:44.6 nTPM
FANTOM5:94.3 Scaled Tags Per Million

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA059328
Amygdala mean intensity 133.779
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 61.501
Basal medial amygdaloid nucleus 89.987
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 51.113
Cortical amygdala 133.779
Central amygdala 65.282
Medial amygdaloid nucleus 81.685

AMYGDALA - HPA Brain RNA-seq
Max nTPM 32.2
Sample id Sample description nTPM
Amygdala
nTPM: 8.6
2814 Male, age 76, right hemisphere 38.3
2517 Female, age 94, left hemisphere 4.8
1987 Female, age 91, left hemisphere 0.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 17.7
2685 Female, age 94, left hemisphere 42.3
2243 Female, age 91, right hemisphere 30.6
1955 Male, age 76, both hemispheres 25.7
2110 Male, age 80, left hemisphere 7.7
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 11.0
1905 Male, age 76, both hemispheres 43.1
2701 Female, age 91, right hemisphere 11.4
2239 Male, age 80, left hemisphere 0.5
2515 Male, age 75, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 25.5
2429 Female, age 94, left hemisphere 45.5
2240 Male, age 76, both hemispheres 31.8
2242 Female, age 91, right hemisphere 28.5
2535 Female, age 67, right hemisphere 24.6
2829 Male, age 80, left hemisphere 22.7
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 4.7
1883 Male, age 76, both hemispheres 27.4
2255 Female, age 91, right hemisphere 1.3
2256 Male, age 80, left hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2534 Female, age 94, left hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 32.2
1974 Female, age 91, both hemispheres 52.0
2486 Female, age 94, both hemispheres 44.6
2201 Male, age 74, unknown 0.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 44.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 44.6
Samples: 152

Max nTPM: 109.4
Min nTPM: 3.0
Std nTPM: 22.7
Median nTPM: 43.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 97.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 95.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 89.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 83.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 82.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 81.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 78.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 77.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 76.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 73.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 70.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 69.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 69.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 68.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 67.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 66.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 64.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 64.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 64.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 63.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 63.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 62.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 62.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 61.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 60.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 59.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 59.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 59.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 58.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 57.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 57.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 56.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 56.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 56.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 56.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 55.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 53.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 53.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 53.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 53.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 52.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 52.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 51.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 51.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 51.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 50.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 48.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 48.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 47.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 46.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 46.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 46.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 45.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 45.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 45.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 44.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 44.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 43.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 42.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 42.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 41.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 41.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 39.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 39.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 38.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 38.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 38.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 38.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 38.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 38.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 37.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 37.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 37.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 36.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 36.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 34.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 32.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 32.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 32.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 32.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 32.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 31.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 30.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 30.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 30.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 29.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 29.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 29.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 28.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 28.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 27.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 26.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 26.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 26.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 25.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 24.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 23.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 22.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 21.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 21.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 21.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 20.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 20.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 20.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 20.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 19.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 18.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 18.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 17.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 17.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 16.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 15.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 14.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 13.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 13.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 12.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 11.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 10.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 10.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 9.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 9.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 7.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 6.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 94.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 94.3
FF:10151-102I7 76 years, female 94.3

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