BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:47.7 nTPM
HPA:47.7 nTPM
GTEx:32.3 nTPM
FANTOM5:94.3 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA059328
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 37.0
2568 Male, age 61, both hemispheres 61.0
2284 Female, age 91, both hemispheres 57.3
2491 Male, age 75, both hemispheres 49.3
2392 Female, age 94, both hemispheres 47.8
2645 Female, age 72, unknown 43.8
2198 Male, age 80, both hemispheres 41.3
1956 Male, age 74, unknown 16.8
2292 Female, age 85, both hemispheres 8.0
2196 Female, age 79, unknown 7.9
Globus pallidus, externus
nTPM: 0.1
2772 Female, age 79, unknown 0.7
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
Globus pallidus, internus
nTPM: 1.5
1818 Male, age 74, unknown 10.6
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 1.9
1856 Female, age 91, right hemisphere 15.5
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 25.5
2775 Male, age 80, right hemisphere 35.2
2029 Male, age 61, right hemisphere 34.3
1812 Female, age 91, both hemispheres 33.4
2195 Female, age 85, both hemispheres 24.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 47.7
1998 Female, age 91, both hemispheres 71.5
2487 Female, age 94, left hemisphere 50.8
2856 Male, age 75, right hemisphere 43.3
1846 Male, age 80, right hemisphere 25.1
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 14.7
2629 Female, age 94, right hemisphere 31.3
2009 Female, age 91, both hemispheres 26.8
2031 Female, age 72, unknown 19.7
1960 Male, age 74, unknown 19.5
2059 Female, age 85, both hemispheres 3.9
2394 Male, age 61, left hemisphere 1.6
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.0
Samples: 246

Max nTPM: 137.0
Min nTPM: 3.3
Std nTPM: 14.3
Median nTPM: 28.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 137.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 72.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 66.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 55.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 54.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 52.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 48.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 48.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 48.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 48.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 46.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.3
Samples: 246

Max nTPM: 140.5
Min nTPM: 2.3
Std nTPM: 16.3
Median nTPM: 31.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 140.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 94.0
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 80.5
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 76.7
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 70.5
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 64.3
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 62.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 62.1
GTEX-1399T-0011-R6b-SM-5K7YL 60-69 years, male 62.0
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 61.6
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 61.4
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Brain - Putamen (basal ganglia)
Average nTPM: 27.4
Samples: 205

Max nTPM: 98.0
Min nTPM: 1.3
Std nTPM: 14.0
Median nTPM: 27.6
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 98.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 62.7
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 58.2
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 58.0
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 55.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 54.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 53.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 53.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 53.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 52.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 50.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 56.3
FF:10164-103B2 76 years, female 56.3
Globus pallidus
Scaled Tags Per Million: 24.2
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 14.6
Nucleus accumbens
Scaled Tags Per Million: 94.3
FF:10037-101F1 23-56 years, mixed 94.3
Putamen
Scaled Tags Per Million: 71.9
FF:10176-103C5 60 years, female 71.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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