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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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95.282
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.5 nTPM
HPA:84.5 nTPM
FANTOM5:256.9 Scaled Tags Per Million

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA059328
Pons mean intensity 95.282
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 45.325
Parabrachial nucleus 17.757
Principle sensory trigeminal nucleus 44.395
Locus coeruleus 44.501
Pontine nucleus 8.149
Vestibular nucleus 30.296
Pontine reticular nucleus, oral 20.578
Lateral lemniscus 58.736
Superior paraolivary nucleus 30.014

PONS - HPA Brain RNA-seq
Max nTPM 84.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 12.4
1984 Male, age 76, both hemispheres 36.1
2188 Female, age 91, both hemispheres 6.9
2301 Female, age 85, both hemispheres 6.6
2090 Male, age 80, both hemispheres 0.0
Dorsal cochlear nucleus
nTPM: 4.3
2058 Male, age 76, both hemispheres 19.7
2370 Male, age 61, both hemispheres 1.8
2187 Female, age 91, both hemispheres 0.0
2378 Male, age 80, both hemispheres 0.0
2802 Male, age 74, right hemisphere 0.0
Dorsal tegmental nucleus
nTPM: 6.6
2358 Male, age 61, both hemispheres 10.7
2083 Male, age 80, both hemispheres 9.1
1936 Male, age 76, left hemisphere 6.8
2326 Male, age 74, both hemispheres 0.0
Dorsolateral tegmental area
nTPM: 6.3
2141 Male, age 76, both hemispheres 19.5
2654 Male, age 80, both hemispheres 7.2
2751 Female, age 85, both hemispheres 4.8
2337 Male, age 61, both hemispheres 0.0
2360 Male, age 74, both hemispheres 0.0
Kolliker-Fuse nucleus
nTPM: 15.6
2163 Male, age 80, both hemispheres 28.6
2793 Female, age 91, left hemisphere 14.6
2315 Male, age 76, right hemisphere 3.7
Lateral lemniscal nuclei
nTPM: 64.5
2169 Male, age 76, both hemispheres 101.4
2453 Male, age 74, right hemisphere 73.8
2036 Male, age 80, both hemispheres 73.3
2746 Female, age 85, left hemisphere 53.7
2320 Female, age 91, left hemisphere 20.4
Lateral parabrachial nucleus
nTPM: 26.1
2139 Female, age 85, right hemisphere 72.9
2013 Male, age 80, both hemispheres 23.1
2790 Male, age 61, both hemispheres 8.4
2792 Male, age 76, both hemispheres 0.0
Lateral vestibular nucleus
nTPM: 12.5
2184 Male, age 76, both hemispheres 25.0
2311 Male, age 80, both hemispheres 0.0
Locus coeruleus
nTPM: 38.7
2123 Female, age 91, both hemispheres 82.4
2720 Male, age 74, both hemispheres 58.6
1980 Male, age 76, both hemispheres 33.0
2014 Male, age 55, unknown 32.4
2788 Male, age 74, unknown 25.5
2162 Male, age 80, both hemispheres 21.0
2317 Female, age 72, unknown 18.1
Medial olivary nucleus
nTPM: 0.0
1943 Male, age 61, both hemispheres 0.0
1962 Male, age 76, both hemispheres 0.0
2138 Female, age 91, both hemispheres 0.0
2851 Male, age 80, both hemispheres 0.0
Medial parabrachial nucleus
nTPM: 11.4
2854 Male, age 80, both hemispheres 34.2
2156 Male, age 61, both hemispheres 14.2
2463 Female, age 85, right hemisphere 5.1
2170 Female, age 91, both hemispheres 1.9
2786 Male, age 76, both hemispheres 1.8
Medial periolivary nuclei
nTPM: 56.0
2171 Female, age 85, both hemispheres 122.4
2063 Male, age 76, both hemispheres 98.8
2791 Male, age 74, right hemisphere 32.5
2458 Female, age 91, both hemispheres 16.4
2081 Male, age 80, both hemispheres 9.7
Motor facial nucleus
nTPM: 49.5
2062 Male, age 76, both hemispheres 108.7
2365 Male, age 74, right hemisphere 60.2
2327 Male, age 80, both hemispheres 51.9
2697 Female, age 85, both hemispheres 51.7
2795 Female, age 91, both hemispheres 20.5
2126 Male, age 61, both hemispheres 4.3
Motor trigeminal nucleus
nTPM: 18.3
2079 Male, age 80, both hemispheres 50.1
2560 Male, age 74, both hemispheres 26.3
2321 Female, age 91, both hemispheres 6.4
2335 Male, age 61, both hemispheres 4.3
2309 Male, age 76, both hemispheres 4.1
Nuclei of the trapezoid body
nTPM: 84.5
2159 Male, age 61, both hemispheres 171.0
2735 Female, age 85, both hemispheres 100.2
1983 Male, age 76, both hemispheres 84.9
2166 Male, age 80, both hemispheres 38.7
2368 Female, age 91, both hemispheres 27.7
Paramedian reticular nucleus
nTPM: 41.1
2050 Female, age 85, both hemispheres 105.7
2057 Male, age 80, both hemispheres 23.5
2313 Male, age 61, both hemispheres 19.5
2052 Male, age 76, both hemispheres 15.8
Pontine nuclei
nTPM: 80.2
1863 Male, age 55, unknown 142.7
2727 Male, age 61, right hemisphere 121.9
2787 Female, age 85, both hemispheres 118.6
2109 Female, age 72, unknown 101.9
1968 Male, age 76, left hemisphere 79.8
2454 Male, age 74, left hemisphere 50.8
2115 Male, age 80, left hemisphere 19.7
2319 Female, age 91, both hemispheres 6.6
Pontine raphe nucleus
nTPM: 38.3
2122 Female, age 85, midline 70.8
2853 Male, age 76, midline 5.9
Posteroventral cochlear nucleus
nTPM: 9.7
2752 Female, age 85, both hemispheres 29.3
2070 Male, age 76, both hemispheres 19.1
2135 Female, age 91, both hemispheres 0.0
2341 Male, age 80, both hemispheres 0.0
2371 Male, age 61, both hemispheres 0.0
Principal sensory trigeminal nucleus
nTPM: 55.2
2158 Male, age 61, both hemispheres 112.5
2008 Male, age 80, left hemisphere 74.7
2324 Male, age 76, both hemispheres 18.9
2367 Female, age 91, left hemisphere 14.6
Reticular pontine nucleus, caudal
nTPM: 31.6
2332 Male, age 80, right hemisphere 62.4
2092 Male, age 76, both hemispheres 52.5
2457 Female, age 91, both hemispheres 11.5
2559 Male, age 74, both hemispheres 0.0
Reticular pontine nucleus, oral
nTPM: 31.5
2012 Female, age 85, both hemispheres 62.8
2361 Male, age 74, both hemispheres 52.6
1939 Male, age 80, both hemispheres 21.8
2167 Male, age 76, both hemispheres 15.1
2366 Female, age 91, both hemispheres 5.4
Reticulotegmental nucleus
nTPM: 23.3
2325 Male, age 76, both hemispheres 52.2
2322 Female, age 91, both hemispheres 17.5
2333 Male, age 80, both hemispheres 15.3
2452 Male, age 74, both hemispheres 8.2
Spinal trigeminal nucleus, oral
nTPM: 14.4
2737 Female, age 85, both hemispheres 30.2
2164 Male, age 80, both hemispheres 13.1
1978 Male, age 76, both hemispheres 0.0
Subcoeruleus area
nTPM: 19.7
2089 Male, age 76, left hemisphere 42.7
1958 Male, age 80, both hemispheres 38.5
2323 Female, age 91, left hemisphere 17.2
2369 Female, age 85, left hemisphere 0.0
2451 Male, age 74, both hemispheres 0.0
Superior olive
nTPM: 50.5
1875 Female, age 85, both hemispheres 100.2
2020 Male, age 76, both hemispheres 42.9
2364 Male, age 74, right hemisphere 41.4
2329 Male, age 80, right hemisphere 40.3
2561 Female, age 91, both hemispheres 27.8
Superior vestibular nucleus
nTPM: 6.1
2061 Male, age 76, both hemispheres 12.3
2015 Male, age 80, both hemispheres 5.9
2383 Male, age 74, both hemispheres 0.0
Ventral periolivary nuclei
nTPM: 61.5
2130 Female, age 85, both hemispheres 94.8
2165 Male, age 80, both hemispheres 68.4
2794 Female, age 91, left hemisphere 47.4
2023 Male, age 76, both hemispheres 35.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 36.8
2449 Male, age 74, both hemispheres 83.5
1959 Male, age 76, both hemispheres 55.5
2840 Female, age 85, both hemispheres 42.8
2161 Male, age 80, both hemispheres 31.6
2456 Female, age 91, both hemispheres 4.7
2359 Male, age 61, both hemispheres 2.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 256.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 92.4
FF:10182-103D2 60 years, female 115.3
FF:10165-103B3 76 years, female 69.5
Pons
Scaled Tags Per Million: 256.9
FF:10033-101E6 18-54 years, mixed 256.9

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