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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:471.6 nTPM
HPA:471.6 nTPM
GTEx:581.3 nTPM
FANTOM5:3200.6 Scaled Tags Per Million
Pig:318.0 nTPM
Mouse:1148.1 nTPM
Allen mouse:23.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 471.6
Sample id Sample description nTPM
Amygdala
nTPM: 471.6
2514 Male, age 75, right hemisphere 507.1
2695 Female, age 67, right hemisphere 499.8
2814 Male, age 76, right hemisphere 494.3
2517 Female, age 94, left hemisphere 481.7
1987 Female, age 91, left hemisphere 374.9
Basal amygdala
nTPM: 411.2
2609 Male, age 75, right hemisphere 689.0
2110 Male, age 80, left hemisphere 453.8
2243 Female, age 91, right hemisphere 396.6
2685 Female, age 94, left hemisphere 373.3
1955 Male, age 76, both hemispheres 345.7
2827 Female, age 67, right hemisphere 208.6
Central amygdala
nTPM: 437.4
2826 Female, age 94, left hemisphere 524.1
1905 Male, age 76, both hemispheres 498.8
2515 Male, age 75, right hemisphere 484.4
2239 Male, age 80, left hemisphere 399.4
2701 Female, age 91, right hemisphere 280.5
Corticomedial amygdala
nTPM: 386.6
2428 Male, age 75, right hemisphere 527.9
2829 Male, age 80, left hemisphere 452.2
2429 Female, age 94, left hemisphere 396.6
2242 Female, age 91, right hemisphere 371.3
2535 Female, age 67, right hemisphere 299.2
2240 Male, age 76, both hemispheres 272.2
Lateral amygdala
nTPM: 418.9
2516 Male, age 75, right hemisphere 598.4
2534 Female, age 94, left hemisphere 550.9
1883 Male, age 76, both hemispheres 463.6
2256 Male, age 80, left hemisphere 372.3
2255 Female, age 91, right hemisphere 353.1
2830 Female, age 67, right hemisphere 175.3
Stria terminalis, bed nucleus
nTPM: 343.1
1974 Female, age 91, both hemispheres 417.9
2486 Female, age 94, both hemispheres 363.7
2201 Male, age 74, unknown 247.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 581.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 581.3
Samples: 152

Max nTPM: 1249.9
Min nTPM: 77.3
Std nTPM: 230.7
Median nTPM: 588.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1249.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1235.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1184.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1135.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1096.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1031.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1003.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 980.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 942.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 931.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 917.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 880.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 878.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 875.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 871.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 856.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 839.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 830.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 828.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 822.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 819.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 817.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 810.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 803.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 778.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 776.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 774.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 765.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 765.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 761.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 760.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 746.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 744.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 737.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 737.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 732.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 731.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 730.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 727.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 726.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 723.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 720.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 719.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 708.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 707.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 704.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 702.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 701.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 698.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 692.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 689.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 688.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 669.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 668.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 665.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 662.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 658.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 651.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 648.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 646.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 642.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 638.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 633.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 620.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 619.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 619.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 616.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 613.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 612.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 602.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 602.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 599.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 598.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 597.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 590.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 588.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 588.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 586.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 585.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 582.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 580.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 570.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 564.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 554.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 552.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 544.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 539.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 535.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 534.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 531.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 530.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 526.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 523.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 523.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 522.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 502.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 498.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 481.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 472.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 468.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 468.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 464.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 463.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 459.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 458.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 454.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 451.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 450.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 449.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 445.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 434.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 420.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 404.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 403.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 399.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 388.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 384.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 376.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 368.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 361.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 360.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 358.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 357.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 357.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 349.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 347.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 344.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 343.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 326.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 313.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 310.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 309.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 308.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 307.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 306.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 305.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 293.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 293.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 285.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 278.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 276.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 264.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 249.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 228.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 226.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 226.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 210.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 161.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 153.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 151.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 101.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 77.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3200.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 3200.6
FF:10151-102I7 76 years, female 3200.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 318.0
Pig sample Sample description nTPM
Amygdala
nTPM: 318.0
Samples: 4

Max nTPM: 418.0
Min nTPM: 260.8
Sample A Female 418.0
Sample B Female 260.8
Sample C Male 294.1
Sample D Male 299.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1148.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 1148.1
Samples: 4

Max nTPM: 1499.7
Min nTPM: 1012.4
Sample A Male 1067.8
Sample B Male 1012.4
Sample C Female 1499.7
Sample D Female 1012.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.9
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 24.4
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 23.5

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