MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:440.4 nTPM
HPA:440.4 nTPM
GTEx:507.5 nTPM
FANTOM5:1405.6 Scaled Tags Per Million
Pig:721.5 nTPM
Mouse:784.8 nTPM
Allen mouse:20.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 440.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 330.7
2019 Male, age 18, unknown 569.1
2828 Female, age 72, unknown 437.5
2586 Male, age 75, left hemisphere 412.8
2219 Male, age 76, both hemispheres 330.0
1827 Male, age 72, unknown 328.1
2411 Female, age 72, unknown 266.5
1870 Female, age 42, unknown 261.6
1833 Male, age 53, unknown 254.7
1830 Male, age 51, unknown 248.6
2666 Male, age 74, left hemisphere 198.1
Dorsal raphe nucleus
nTPM: 358.3
1828 Male, age 53, unknown 426.2
2298 Female, age 72, unknown 417.6
2047 Male, age 72, unknown 341.2
2016 Female, age 72, unknown 325.7
2750 Male, age 76, both hemispheres 280.9
Inferior colliculus
nTPM: 385.1
2097 Female, age 72, unknown 472.1
1890 Male, age 53, unknown 436.4
1848 Female, age 42, unknown 350.2
2849 Male, age 72, unknown 281.8
Median raphe nucleus
nTPM: 236.5
2220 Male, age 76, midline 236.5
Pedunculopontine tegmental nucleus
nTPM: 237.7
1921 Female, age 85, both hemispheres 325.2
2334 Male, age 80, both hemispheres 264.6
2338 Male, age 61, both hemispheres 123.3
Periaquaductal grey, anterior
nTPM: 346.9
1795 Male, age 51, unknown 372.0
2502 Female, age 75, unknown 368.4
1947 Male, age 18, unknown 300.1
Periaquaductal grey, dorsal
nTPM: 266.9
2464 Female, age 72, unknown 275.4
2850 Male, age 76, both hemispheres 274.0
1840 Male, age 53, unknown 266.3
1831 Male, age 72, unknown 252.1
Periaquaductal grey, lateral
nTPM: 295.8
2272 Male, age 74, both hemispheres 369.5
2140 Male, age 76, both hemispheres 278.3
2053 Male, age 18, unknown 239.7
Pretectal area
nTPM: 440.4
2667 Female, age 75, unknown 584.4
1944 Female, age 72, unknown 562.5
2007 Male, age 72, unknown 560.5
1817 Female, age 42, unknown 550.8
1816 Male, age 51, unknown 526.1
2273 Male, age 74, both hemispheres 506.1
1815 Male, age 53, unknown 410.4
2316 Male, age 76, right hemisphere 316.5
2407 Male, age 75, both hemispheres 310.9
2224 Female, age 72, unknown 290.5
2825 Male, age 18, unknown 225.9
Red nucleus
nTPM: 395.1
2785 Male, age 18, unknown 547.7
2503 Female, age 72, unknown 454.3
1821 Female, age 72, unknown 443.6
2227 Male, age 72, unknown 436.0
2769 Male, age 72, unknown 432.8
1954 Female, age 42, unknown 393.0
1904 Male, age 53, unknown 373.1
2823 Male, age 76, right hemisphere 370.6
1865 Male, age 51, unknown 366.1
2725 Female, age 75, unknown 354.4
2588 Male, age 74, left hemisphere 327.2
2584 Male, age 75, left hemisphere 242.9
Substantia nigra
nTPM: 357.9
1916 Female, age 42, unknown 482.9
1889 Female, age 72, unknown 481.7
1851 Male, age 51, unknown 414.1
1941 Male, age 53, unknown 398.4
2583 Male, age 75, right hemisphere 357.2
2699 Male, age 18, unknown 327.3
2665 Male, age 74, both hemispheres 293.7
2241 Male, age 72, unknown 283.9
2590 Female, age 75, unknown 278.1
2409 Female, age 72, unknown 261.2
Superior colliculus
nTPM: 362.4
2087 Female, age 72, unknown 498.0
1796 Male, age 53, unknown 404.4
2664 Male, age 75, both hemispheres 384.1
2261 Male, age 18, unknown 382.8
1995 Male, age 72, unknown 373.7
2668 Female, age 75, unknown 331.3
2587 Male, age 74, left hemisphere 317.4
1913 Female, age 42, unknown 316.1
1839 Male, age 51, unknown 315.5
1895 Male, age 76, right hemisphere 300.6
Ventral tegmental area
nTPM: 322.7
1915 Female, age 42, unknown 372.4
2410 Female, age 72, unknown 364.5
2218 Male, age 76, both hemispheres 357.3
1942 Male, age 51, unknown 305.2
2223 Female, age 72, unknown 301.5
2021 Male, age 53, unknown 235.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 507.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 507.5
Samples: 139

Max nTPM: 1056.2
Min nTPM: 132.0
Std nTPM: 175.3
Median nTPM: 484.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1056.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 962.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 912.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 903.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 896.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 874.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 843.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 811.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 798.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 796.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 765.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1405.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1405.6
FF:10158-103A5 76 years, female 1405.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 721.5
Pig sample Sample description nTPM
Midbrain
nTPM: 647.4
Samples: 4

Max nTPM: 720.3
Min nTPM: 486.0
Sample A Female 709.9
Sample B Female 486.0
Sample C Male 673.5
Sample D Male 720.3
Periaqueductal gray
nTPM: 449.2
Samples: 3

Max nTPM: 527.1
Min nTPM: 346.5
Sample B Female 474.0
Sample C Male 527.1
Sample D Male 346.5
Substantia nigra
nTPM: 548.5
Samples: 4

Max nTPM: 681.8
Min nTPM: 370.5
Sample A Female 681.8
Sample B Female 370.5
Sample C Male 550.8
Sample D Male 590.7
Superior colliculi
nTPM: 721.6
Samples: 4

Max nTPM: 1019.8
Min nTPM: 429.9
Sample A Female 1019.8
Sample B Female 429.9
Sample C Male 811.1
Sample D Male 625.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 784.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 784.8
Samples: 4

Max nTPM: 972.5
Min nTPM: 666.1
Sample A Male 972.5
Sample B Male 710.0
Sample C Female 666.1
Sample D Female 790.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.4
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 21.3
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 19.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.