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TISSUE PRIMARY DATA PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:345.1 nTPM
HPA:345.1 nTPM
FANTOM5:3053.3 Scaled Tags Per Million
Pig:633.6 nTPM
Allen mouse:18.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 345.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 306.4
1984 Male, age 76, both hemispheres 498.5
2090 Male, age 80, both hemispheres 252.0
2301 Female, age 85, both hemispheres 249.2
2188 Female, age 91, both hemispheres 226.0
Dorsal cochlear nucleus
nTPM: 342.2
2802 Male, age 74, right hemisphere 433.6
2058 Male, age 76, both hemispheres 400.5
2370 Male, age 61, both hemispheres 336.3
2187 Female, age 91, both hemispheres 271.7
2378 Male, age 80, both hemispheres 268.8
Dorsal tegmental nucleus
nTPM: 263.5
2083 Male, age 80, both hemispheres 342.4
1936 Male, age 76, left hemisphere 302.1
2326 Male, age 74, both hemispheres 285.7
2358 Male, age 61, both hemispheres 123.9
Dorsolateral tegmental area
nTPM: 257.9
2141 Male, age 76, both hemispheres 322.6
2751 Female, age 85, both hemispheres 303.0
2654 Male, age 80, both hemispheres 295.3
2360 Male, age 74, both hemispheres 287.4
2337 Male, age 61, both hemispheres 81.0
Kolliker-Fuse nucleus
nTPM: 256.3
2163 Male, age 80, both hemispheres 262.4
2315 Male, age 76, right hemisphere 258.6
2793 Female, age 91, left hemisphere 248.1
Lateral lemniscal nuclei
nTPM: 292.0
2169 Male, age 76, both hemispheres 440.2
2453 Male, age 74, right hemisphere 279.4
2036 Male, age 80, both hemispheres 252.9
2746 Female, age 85, left hemisphere 252.6
2320 Female, age 91, left hemisphere 234.8
Lateral parabrachial nucleus
nTPM: 237.4
2139 Female, age 85, right hemisphere 378.6
2013 Male, age 80, both hemispheres 250.4
2792 Male, age 76, both hemispheres 195.8
2790 Male, age 61, both hemispheres 124.9
Lateral vestibular nucleus
nTPM: 332.4
2184 Male, age 76, both hemispheres 372.0
2311 Male, age 80, both hemispheres 292.8
Locus coeruleus
nTPM: 273.4
2123 Female, age 91, both hemispheres 378.7
2014 Male, age 55, unknown 299.8
2317 Female, age 72, unknown 291.0
1980 Male, age 76, both hemispheres 273.5
2162 Male, age 80, both hemispheres 251.1
2720 Male, age 74, both hemispheres 245.5
2788 Male, age 74, unknown 174.1
Medial olivary nucleus
nTPM: 264.9
2138 Female, age 91, both hemispheres 520.4
2851 Male, age 80, both hemispheres 200.2
1962 Male, age 76, both hemispheres 187.2
1943 Male, age 61, both hemispheres 151.9
Medial parabrachial nucleus
nTPM: 280.2
2463 Female, age 85, right hemisphere 341.2
2170 Female, age 91, both hemispheres 292.8
2786 Male, age 76, both hemispheres 290.6
2854 Male, age 80, both hemispheres 260.2
2156 Male, age 61, both hemispheres 216.3
Medial periolivary nuclei
nTPM: 274.8
2063 Male, age 76, both hemispheres 415.5
2171 Female, age 85, both hemispheres 283.3
2791 Male, age 74, right hemisphere 240.5
2458 Female, age 91, both hemispheres 232.0
2081 Male, age 80, both hemispheres 202.7
Motor facial nucleus
nTPM: 309.1
2062 Male, age 76, both hemispheres 499.0
2795 Female, age 91, both hemispheres 348.9
2126 Male, age 61, both hemispheres 286.2
2365 Male, age 74, right hemisphere 257.7
2327 Male, age 80, both hemispheres 250.2
2697 Female, age 85, both hemispheres 212.4
Motor trigeminal nucleus
nTPM: 239.2
2079 Male, age 80, both hemispheres 263.3
2560 Male, age 74, both hemispheres 247.0
2335 Male, age 61, both hemispheres 236.4
2309 Male, age 76, both hemispheres 236.2
2321 Female, age 91, both hemispheres 213.3
Nuclei of the trapezoid body
nTPM: 345.1
1983 Male, age 76, both hemispheres 455.0
2159 Male, age 61, both hemispheres 415.7
2735 Female, age 85, both hemispheres 295.8
2166 Male, age 80, both hemispheres 281.3
2368 Female, age 91, both hemispheres 277.8
Paramedian reticular nucleus
nTPM: 254.9
2057 Male, age 80, both hemispheres 295.2
2050 Female, age 85, both hemispheres 283.9
2313 Male, age 61, both hemispheres 276.5
2052 Male, age 76, both hemispheres 164.2
Pontine nuclei
nTPM: 339.7
1863 Male, age 55, unknown 577.7
1968 Male, age 76, left hemisphere 461.6
2109 Female, age 72, unknown 398.8
2787 Female, age 85, both hemispheres 345.0
2454 Male, age 74, left hemisphere 256.6
2115 Male, age 80, left hemisphere 234.0
2727 Male, age 61, right hemisphere 225.4
2319 Female, age 91, both hemispheres 218.5
Pontine raphe nucleus
nTPM: 282.5
2122 Female, age 85, midline 297.7
2853 Male, age 76, midline 267.2
Posteroventral cochlear nucleus
nTPM: 280.8
2070 Male, age 76, both hemispheres 337.7
2371 Male, age 61, both hemispheres 327.2
2752 Female, age 85, both hemispheres 320.8
2341 Male, age 80, both hemispheres 224.2
2135 Female, age 91, both hemispheres 194.0
Principal sensory trigeminal nucleus
nTPM: 291.1
2324 Male, age 76, both hemispheres 387.4
2158 Male, age 61, both hemispheres 320.4
2008 Male, age 80, left hemisphere 248.3
2367 Female, age 91, left hemisphere 208.5
Reticular pontine nucleus, caudal
nTPM: 295.3
2092 Male, age 76, both hemispheres 377.9
2332 Male, age 80, right hemisphere 333.7
2457 Female, age 91, both hemispheres 284.1
2559 Male, age 74, both hemispheres 185.6
Reticular pontine nucleus, oral
nTPM: 266.9
1939 Male, age 80, both hemispheres 301.2
2167 Male, age 76, both hemispheres 300.6
2012 Female, age 85, both hemispheres 296.3
2366 Female, age 91, both hemispheres 243.6
2361 Male, age 74, both hemispheres 192.5
Reticulotegmental nucleus
nTPM: 315.0
2322 Female, age 91, both hemispheres 364.9
2333 Male, age 80, both hemispheres 338.3
2325 Male, age 76, both hemispheres 284.8
2452 Male, age 74, both hemispheres 272.2
Spinal trigeminal nucleus, oral
nTPM: 320.1
1978 Male, age 76, both hemispheres 353.1
2737 Female, age 85, both hemispheres 322.1
2164 Male, age 80, both hemispheres 285.1
Subcoeruleus area
nTPM: 280.3
2089 Male, age 76, left hemisphere 334.6
2323 Female, age 91, left hemisphere 296.1
2369 Female, age 85, left hemisphere 275.3
1958 Male, age 80, both hemispheres 248.4
2451 Male, age 74, both hemispheres 247.0
Superior olive
nTPM: 266.3
2020 Male, age 76, both hemispheres 327.4
2329 Male, age 80, right hemisphere 270.9
1875 Female, age 85, both hemispheres 255.8
2364 Male, age 74, right hemisphere 247.5
2561 Female, age 91, both hemispheres 230.2
Superior vestibular nucleus
nTPM: 329.7
2061 Male, age 76, both hemispheres 373.7
2383 Male, age 74, both hemispheres 344.1
2015 Male, age 80, both hemispheres 271.4
Ventral periolivary nuclei
nTPM: 266.9
2165 Male, age 80, both hemispheres 339.2
2130 Female, age 85, both hemispheres 299.9
2023 Male, age 76, both hemispheres 251.4
2794 Female, age 91, left hemisphere 177.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 264.7
1959 Male, age 76, both hemispheres 315.1
2449 Male, age 74, both hemispheres 294.9
2840 Female, age 85, both hemispheres 286.7
2456 Female, age 91, both hemispheres 266.4
2161 Male, age 80, both hemispheres 256.9
2359 Male, age 61, both hemispheres 168.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 3053.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 2796.8
FF:10182-103D2 60 years, female 3950.2
FF:10165-103B3 76 years, female 1643.3
Pons
Scaled Tags Per Million: 3053.3
FF:10033-101E6 18-54 years, mixed 3053.3

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 633.6
Pig sample Sample description nTPM
Pons
nTPM: 633.6
Samples: 4

Max nTPM: 794.0
Min nTPM: 421.1
Sample A Female 720.0
Sample B Female 421.1
Sample C Male 599.4
Sample D Male 794.0

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 18.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 18.0
70927826 Antisense, RP_050725_01_B02, Mouse strain C57BL/6J (56 days, male) 19.8
393211 Antisense, RP_040804_02_D11, Mouse strain C57BL/6J (56 days, male) 16.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.