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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:697.6 nTPM
HPA:697.6 nTPM
GTEx:265.9 nTPM
FANTOM5:840.1 Scaled Tags Per Million
Pig:146.9 nTPM
Mouse:229.3 nTPM
Allen mouse:1.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 697.6
Sample id Sample description nTPM
Amygdala
nTPM: 697.6
2514 Male, age 75, right hemisphere 782.0
2695 Female, age 67, right hemisphere 749.0
2814 Male, age 76, right hemisphere 691.4
1987 Female, age 91, left hemisphere 646.9
2517 Female, age 94, left hemisphere 618.5
Basal amygdala
nTPM: 619.7
1955 Male, age 76, both hemispheres 658.4
2609 Male, age 75, right hemisphere 641.7
2110 Male, age 80, left hemisphere 629.8
2827 Female, age 67, right hemisphere 610.7
2685 Female, age 94, left hemisphere 589.0
2243 Female, age 91, right hemisphere 588.7
Central amygdala
nTPM: 647.5
2515 Male, age 75, right hemisphere 684.6
2826 Female, age 94, left hemisphere 667.8
1905 Male, age 76, both hemispheres 666.3
2701 Female, age 91, right hemisphere 612.2
2239 Male, age 80, left hemisphere 606.7
Corticomedial amygdala
nTPM: 633.5
2428 Male, age 75, right hemisphere 712.5
2240 Male, age 76, both hemispheres 665.7
2429 Female, age 94, left hemisphere 619.3
2242 Female, age 91, right hemisphere 619.1
2829 Male, age 80, left hemisphere 593.5
2535 Female, age 67, right hemisphere 591.1
Lateral amygdala
nTPM: 647.8
1883 Male, age 76, both hemispheres 670.0
2830 Female, age 67, right hemisphere 666.9
2516 Male, age 75, right hemisphere 664.9
2534 Female, age 94, left hemisphere 659.4
2256 Male, age 80, left hemisphere 632.1
2255 Female, age 91, right hemisphere 593.7
Stria terminalis, bed nucleus
nTPM: 593.4
1974 Female, age 91, both hemispheres 602.9
2201 Male, age 74, unknown 592.5
2486 Female, age 94, both hemispheres 584.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 265.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 265.9
Samples: 152

Max nTPM: 2941.2
Min nTPM: 28.5
Std nTPM: 264.9
Median nTPM: 210.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2941.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 794.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 789.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 685.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 684.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 670.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 652.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 620.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 559.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 550.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 508.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 495.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 485.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 474.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 467.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 467.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 452.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 449.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 412.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 411.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 403.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 398.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 388.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 378.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 375.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 373.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 364.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 361.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 349.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 343.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 342.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 332.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 328.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 327.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 324.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 322.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 321.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 321.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 320.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 317.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 315.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 315.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 312.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 310.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 304.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 304.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 304.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 298.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 294.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 293.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 292.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 281.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 273.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 270.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 256.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 254.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 254.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 254.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 250.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 246.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 245.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 245.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 243.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 243.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 241.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 238.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 237.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 235.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 233.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 231.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 227.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 223.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 220.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 214.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 214.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 210.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 210.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 207.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 206.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 205.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 204.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 203.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 203.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 202.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 200.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 196.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 195.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 192.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 189.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 185.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 184.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 183.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 181.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 178.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 176.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 175.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 169.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 169.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 167.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 166.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 166.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 156.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 156.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 152.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 148.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 147.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 145.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 145.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 143.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 142.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 142.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 141.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 140.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 132.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 130.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 127.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 124.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 122.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 121.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 121.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 121.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 119.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 115.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 114.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 111.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 111.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 108.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 105.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 99.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 97.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 95.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 94.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 87.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 81.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 77.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 72.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 72.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 68.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 57.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 49.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 29.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 28.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 840.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 840.1
FF:10151-102I7 76 years, female 840.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.9
Pig sample Sample description nTPM
Amygdala
nTPM: 146.9
Samples: 4

Max nTPM: 176.2
Min nTPM: 104.5
Sample A Female 172.0
Sample B Female 176.2
Sample C Male 135.0
Sample D Male 104.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 229.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 229.3
Samples: 4

Max nTPM: 269.6
Min nTPM: 193.3
Sample A Male 193.3
Sample B Male 204.7
Sample C Female 269.6
Sample D Female 249.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.4
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 1.4
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.2

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