MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:763.2 nTPM
HPA:763.2 nTPM
GTEx:347.7 nTPM
FANTOM5:1760.9 Scaled Tags Per Million
Pig:394.8 nTPM
Mouse:267.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 763.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 652.0
1870 Female, age 42, unknown 709.6
2019 Male, age 18, unknown 687.8
1833 Male, age 53, unknown 669.9
1830 Male, age 51, unknown 669.8
2828 Female, age 72, unknown 659.4
2411 Female, age 72, unknown 655.9
2666 Male, age 74, left hemisphere 655.7
1827 Male, age 72, unknown 627.2
2219 Male, age 76, both hemispheres 603.4
2586 Male, age 75, left hemisphere 581.6
Dorsal raphe nucleus
nTPM: 688.6
1828 Male, age 53, unknown 724.6
2298 Female, age 72, unknown 705.1
2016 Female, age 72, unknown 692.9
2750 Male, age 76, both hemispheres 679.6
2047 Male, age 72, unknown 640.6
Inferior colliculus
nTPM: 650.9
2097 Female, age 72, unknown 689.6
1848 Female, age 42, unknown 653.3
1890 Male, age 53, unknown 637.6
2849 Male, age 72, unknown 623.2
Median raphe nucleus
nTPM: 653.8
2220 Male, age 76, midline 653.8
Pedunculopontine tegmental nucleus
nTPM: 763.2
2338 Male, age 61, both hemispheres 939.3
2334 Male, age 80, both hemispheres 709.3
1921 Female, age 85, both hemispheres 641.0
Periaquaductal grey, anterior
nTPM: 670.3
2502 Female, age 75, unknown 717.2
1947 Male, age 18, unknown 652.6
1795 Male, age 51, unknown 641.0
Periaquaductal grey, dorsal
nTPM: 656.7
2850 Male, age 76, both hemispheres 677.9
1831 Male, age 72, unknown 674.8
2464 Female, age 72, unknown 656.3
1840 Male, age 53, unknown 617.7
Periaquaductal grey, lateral
nTPM: 669.7
2272 Male, age 74, both hemispheres 682.1
2053 Male, age 18, unknown 666.1
2140 Male, age 76, both hemispheres 661.1
Pretectal area
nTPM: 650.0
1817 Female, age 42, unknown 678.8
2316 Male, age 76, right hemisphere 670.2
2224 Female, age 72, unknown 666.7
2667 Female, age 75, unknown 664.2
2273 Male, age 74, both hemispheres 661.8
2007 Male, age 72, unknown 656.6
1815 Male, age 53, unknown 649.0
1944 Female, age 72, unknown 647.0
2825 Male, age 18, unknown 640.3
1816 Male, age 51, unknown 624.0
2407 Male, age 75, both hemispheres 591.1
Red nucleus
nTPM: 696.5
1954 Female, age 42, unknown 754.5
1821 Female, age 72, unknown 748.9
1865 Male, age 51, unknown 726.5
2503 Female, age 72, unknown 717.2
2823 Male, age 76, right hemisphere 714.9
2769 Male, age 72, unknown 712.7
2227 Male, age 72, unknown 702.3
1904 Male, age 53, unknown 694.7
2785 Male, age 18, unknown 691.1
2725 Female, age 75, unknown 663.7
2584 Male, age 75, left hemisphere 615.8
2588 Male, age 74, left hemisphere 615.3
Substantia nigra
nTPM: 687.4
2409 Female, age 72, unknown 756.6
2699 Male, age 18, unknown 712.6
1851 Male, age 51, unknown 708.6
2665 Male, age 74, both hemispheres 704.8
2241 Male, age 72, unknown 688.2
1889 Female, age 72, unknown 672.5
2590 Female, age 75, unknown 669.0
1941 Male, age 53, unknown 664.1
1916 Female, age 42, unknown 661.3
2583 Male, age 75, right hemisphere 636.8
Superior colliculus
nTPM: 656.8
1913 Female, age 42, unknown 718.9
1995 Male, age 72, unknown 692.1
2587 Male, age 74, left hemisphere 685.0
1895 Male, age 76, right hemisphere 669.0
1796 Male, age 53, unknown 658.4
2087 Female, age 72, unknown 653.9
1839 Male, age 51, unknown 648.9
2668 Female, age 75, unknown 632.5
2261 Male, age 18, unknown 620.2
2664 Male, age 75, both hemispheres 589.0
Ventral tegmental area
nTPM: 689.0
2410 Female, age 72, unknown 714.6
2021 Male, age 53, unknown 699.3
1915 Female, age 42, unknown 697.8
2218 Male, age 76, both hemispheres 674.7
2223 Female, age 72, unknown 673.9
1942 Male, age 51, unknown 673.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 347.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 347.7
Samples: 139

Max nTPM: 1281.6
Min nTPM: 50.4
Std nTPM: 182.4
Median nTPM: 309.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1281.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 801.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 715.6
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 711.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 694.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 676.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 671.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 668.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 660.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 645.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 639.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1760.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1760.9
FF:10158-103A5 76 years, female 1760.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 394.8
Pig sample Sample description nTPM
Midbrain
nTPM: 269.2
Samples: 4

Max nTPM: 353.8
Min nTPM: 189.7
Sample A Female 353.8
Sample B Female 299.7
Sample C Male 233.5
Sample D Male 189.7
Periaqueductal gray
nTPM: 232.3
Samples: 3

Max nTPM: 285.0
Min nTPM: 185.9
Sample B Female 285.0
Sample C Male 226.1
Sample D Male 185.9
Substantia nigra
nTPM: 394.8
Samples: 4

Max nTPM: 567.6
Min nTPM: 285.9
Sample A Female 419.3
Sample B Female 567.6
Sample C Male 285.9
Sample D Male 306.3
Superior colliculi
nTPM: 382.7
Samples: 4

Max nTPM: 603.0
Min nTPM: 278.7
Sample A Female 357.5
Sample B Female 603.0
Sample C Male 278.7
Sample D Male 291.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 267.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 267.6
Samples: 4

Max nTPM: 274.7
Min nTPM: 256.4
Sample A Male 269.4
Sample B Male 269.9
Sample C Female 256.4
Sample D Female 274.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.8
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.