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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:838.3 nTPM
HPA:838.3 nTPM
GTEx:470.6 nTPM
FANTOM5:1845.3 Scaled Tags Per Million
Pig:493.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 838.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 718.4
1981 Female, age 72, midline 830.1
2048 Male, age 55, midline 762.2
2816 Male, age 47, midline 682.1
2194 Female, age 79, both hemispheres 658.8
2565 Male, age 75, midline 658.8
Cervical spinal cord, dorsal horn
nTPM: 838.3
2297 Male, age 75, both hemispheres 951.4
2069 Male, age 47, both hemispheres 923.5
2721 Male, age 90, both hemispheres 810.1
2296 Male, age 66, both hemispheres 784.5
2173 Female, age 72, unknown 783.9
1877 Male, age 55, unknown 776.7
Cervical spinal cord, ventral horn
nTPM: 806.1
2098 Female, age 72, unknown 1084.3
2809 Male, age 90, both hemispheres 911.8
2480 Male, age 75, both hemispheres 763.2
2295 Male, age 66, both hemispheres 751.6
2068 Male, age 55, unknown 690.1
2820 Female, age 79, both hemispheres 635.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 470.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 470.6
Samples: 159

Max nTPM: 1558.6
Min nTPM: 41.5
Std nTPM: 254.9
Median nTPM: 430.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1558.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1455.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1241.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1170.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1082.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1034.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 957.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 946.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 929.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 927.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 900.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 874.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 856.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 818.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 815.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 776.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 770.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 766.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 749.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 737.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 729.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 716.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 702.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 695.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 685.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 684.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 680.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 675.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 674.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 662.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 650.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 640.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 637.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 625.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 622.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 617.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 615.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 614.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 607.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 596.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 584.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 579.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 568.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 568.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 565.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 560.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 557.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 544.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 542.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 538.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 537.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 534.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 533.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 533.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 509.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 505.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 504.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 502.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 495.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 488.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 484.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 473.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 472.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 468.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 466.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 461.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 459.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 458.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 458.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 458.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 455.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 453.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 451.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 448.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 448.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 447.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 435.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 433.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 431.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 430.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 430.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 429.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 415.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 412.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 400.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 398.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 389.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 386.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 385.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 384.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 383.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 380.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 379.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 379.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 378.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 376.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 371.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 370.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 369.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 368.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 360.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 358.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 350.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 350.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 348.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 344.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 344.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 342.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 338.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 338.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 337.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 337.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 333.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 328.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 328.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 327.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 326.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 320.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 314.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 312.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 310.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 307.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 305.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 298.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 293.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 284.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 282.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 280.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 279.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 272.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 269.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 264.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 256.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 253.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 252.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 251.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 250.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 238.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 217.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 215.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 212.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 193.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 184.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 181.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 177.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 177.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 172.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 160.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 144.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 129.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 125.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 114.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 105.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 75.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 67.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 65.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 43.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 41.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1845.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1845.3
FF:10159-103A6 76 years, female 2136.3
FF:10181-103D1 60 years, female 1554.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 493.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 494.0
Samples: 4

Max nTPM: 694.0
Min nTPM: 285.7
Sample A Female 285.7
Sample B Female 635.9
Sample C Male 694.0
Sample D Male 360.2
Ventral spinal cord
nTPM: 432.4
Samples: 4

Max nTPM: 490.2
Min nTPM: 287.3
Sample A Female 287.3
Sample B Female 490.2
Sample C Male 465.5
Sample D Male 486.6

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