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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:815.3 nTPM
HPA:815.3 nTPM
FANTOM5:1098.0 Scaled Tags Per Million
Pig:294.1 nTPM
Allen mouse:1.1 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 815.3
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 729.4
2090 Male, age 80, both hemispheres 793.1
2188 Female, age 91, both hemispheres 754.3
2301 Female, age 85, both hemispheres 727.8
1984 Male, age 76, both hemispheres 642.4
Dorsal cochlear nucleus
nTPM: 735.9
2378 Male, age 80, both hemispheres 782.8
2802 Male, age 74, right hemisphere 760.7
2187 Female, age 91, both hemispheres 730.8
2370 Male, age 61, both hemispheres 723.6
2058 Male, age 76, both hemispheres 681.6
Dorsal tegmental nucleus
nTPM: 723.5
2358 Male, age 61, both hemispheres 811.5
2326 Male, age 74, both hemispheres 742.9
1936 Male, age 76, left hemisphere 675.2
2083 Male, age 80, both hemispheres 664.4
Dorsolateral tegmental area
nTPM: 760.3
2337 Male, age 61, both hemispheres 1004.4
2360 Male, age 74, both hemispheres 729.6
2654 Male, age 80, both hemispheres 719.1
2751 Female, age 85, both hemispheres 706.1
2141 Male, age 76, both hemispheres 642.2
Kolliker-Fuse nucleus
nTPM: 729.5
2163 Male, age 80, both hemispheres 742.8
2315 Male, age 76, right hemisphere 734.6
2793 Female, age 91, left hemisphere 711.0
Lateral lemniscal nuclei
nTPM: 679.2
2746 Female, age 85, left hemisphere 713.6
2453 Male, age 74, right hemisphere 682.5
2036 Male, age 80, both hemispheres 680.0
2320 Female, age 91, left hemisphere 677.7
2169 Male, age 76, both hemispheres 642.3
Lateral parabrachial nucleus
nTPM: 743.2
2013 Male, age 80, both hemispheres 807.7
2792 Male, age 76, both hemispheres 771.4
2790 Male, age 61, both hemispheres 700.5
2139 Female, age 85, right hemisphere 693.2
Lateral vestibular nucleus
nTPM: 701.5
2311 Male, age 80, both hemispheres 751.9
2184 Male, age 76, both hemispheres 651.1
Locus coeruleus
nTPM: 668.4
2162 Male, age 80, both hemispheres 686.4
2123 Female, age 91, both hemispheres 684.6
2720 Male, age 74, both hemispheres 683.9
2317 Female, age 72, unknown 675.6
2788 Male, age 74, unknown 664.8
1980 Male, age 76, both hemispheres 643.0
2014 Male, age 55, unknown 640.9
Medial olivary nucleus
nTPM: 815.3
1943 Male, age 61, both hemispheres 943.0
2851 Male, age 80, both hemispheres 807.7
1962 Male, age 76, both hemispheres 757.0
2138 Female, age 91, both hemispheres 753.7
Medial parabrachial nucleus
nTPM: 698.2
2854 Male, age 80, both hemispheres 760.1
2170 Female, age 91, both hemispheres 728.8
2156 Male, age 61, both hemispheres 675.8
2786 Male, age 76, both hemispheres 670.6
2463 Female, age 85, right hemisphere 655.8
Medial periolivary nuclei
nTPM: 705.5
2791 Male, age 74, right hemisphere 795.5
2081 Male, age 80, both hemispheres 737.3
2458 Female, age 91, both hemispheres 695.1
2063 Male, age 76, both hemispheres 666.0
2171 Female, age 85, both hemispheres 633.5
Motor facial nucleus
nTPM: 697.2
2795 Female, age 91, both hemispheres 756.1
2365 Male, age 74, right hemisphere 737.5
2126 Male, age 61, both hemispheres 718.2
2697 Female, age 85, both hemispheres 684.7
2062 Male, age 76, both hemispheres 648.7
2327 Male, age 80, both hemispheres 638.1
Motor trigeminal nucleus
nTPM: 691.4
2335 Male, age 61, both hemispheres 729.0
2560 Male, age 74, both hemispheres 705.9
2079 Male, age 80, both hemispheres 685.2
2321 Female, age 91, both hemispheres 675.8
2309 Male, age 76, both hemispheres 661.3
Nuclei of the trapezoid body
nTPM: 661.5
1983 Male, age 76, both hemispheres 680.0
2368 Female, age 91, both hemispheres 666.3
2166 Male, age 80, both hemispheres 666.1
2159 Male, age 61, both hemispheres 661.6
2735 Female, age 85, both hemispheres 633.4
Paramedian reticular nucleus
nTPM: 702.9
2052 Male, age 76, both hemispheres 747.5
2313 Male, age 61, both hemispheres 706.1
2057 Male, age 80, both hemispheres 684.9
2050 Female, age 85, both hemispheres 672.9
Pontine nuclei
nTPM: 687.6
2319 Female, age 91, both hemispheres 749.1
2454 Male, age 74, left hemisphere 711.2
2115 Male, age 80, left hemisphere 706.2
2727 Male, age 61, right hemisphere 698.4
2109 Female, age 72, unknown 678.8
1863 Male, age 55, unknown 668.6
1968 Male, age 76, left hemisphere 650.1
2787 Female, age 85, both hemispheres 638.4
Pontine raphe nucleus
nTPM: 655.3
2853 Male, age 76, midline 666.5
2122 Female, age 85, midline 644.2
Posteroventral cochlear nucleus
nTPM: 757.5
2341 Male, age 80, both hemispheres 832.1
2135 Female, age 91, both hemispheres 810.1
2371 Male, age 61, both hemispheres 776.2
2070 Male, age 76, both hemispheres 685.8
2752 Female, age 85, both hemispheres 683.1
Principal sensory trigeminal nucleus
nTPM: 676.2
2367 Female, age 91, left hemisphere 725.1
2008 Male, age 80, left hemisphere 674.8
2324 Male, age 76, both hemispheres 657.0
2158 Male, age 61, both hemispheres 647.9
Reticular pontine nucleus, caudal
nTPM: 677.1
2457 Female, age 91, both hemispheres 717.7
2559 Male, age 74, both hemispheres 679.7
2092 Male, age 76, both hemispheres 673.6
2332 Male, age 80, right hemisphere 637.4
Reticular pontine nucleus, oral
nTPM: 694.5
2361 Male, age 74, both hemispheres 715.4
1939 Male, age 80, both hemispheres 712.9
2366 Female, age 91, both hemispheres 696.1
2167 Male, age 76, both hemispheres 686.9
2012 Female, age 85, both hemispheres 661.3
Reticulotegmental nucleus
nTPM: 683.6
2333 Male, age 80, both hemispheres 703.5
2322 Female, age 91, both hemispheres 702.6
2452 Male, age 74, both hemispheres 678.0
2325 Male, age 76, both hemispheres 650.4
Spinal trigeminal nucleus, oral
nTPM: 706.5
2737 Female, age 85, both hemispheres 730.8
2164 Male, age 80, both hemispheres 716.6
1978 Male, age 76, both hemispheres 672.0
Subcoeruleus area
nTPM: 688.8
2369 Female, age 85, left hemisphere 730.0
2451 Male, age 74, both hemispheres 727.7
1958 Male, age 80, both hemispheres 691.9
2323 Female, age 91, left hemisphere 657.7
2089 Male, age 76, left hemisphere 636.8
Superior olive
nTPM: 683.9
2364 Male, age 74, right hemisphere 738.5
2020 Male, age 76, both hemispheres 688.4
2561 Female, age 91, both hemispheres 685.5
2329 Male, age 80, right hemisphere 659.3
1875 Female, age 85, both hemispheres 648.0
Superior vestibular nucleus
nTPM: 746.8
2383 Male, age 74, both hemispheres 815.1
2015 Male, age 80, both hemispheres 761.2
2061 Male, age 76, both hemispheres 664.1
Ventral periolivary nuclei
nTPM: 693.1
2794 Female, age 91, left hemisphere 742.9
2023 Male, age 76, both hemispheres 714.7
2165 Male, age 80, both hemispheres 667.6
2130 Female, age 85, both hemispheres 647.3
Ventrolateral tegmental area, A5 NE cell group
nTPM: 737.6
2359 Male, age 61, both hemispheres 901.9
2161 Male, age 80, both hemispheres 731.8
2840 Female, age 85, both hemispheres 729.6
2456 Female, age 91, both hemispheres 706.9
2449 Male, age 74, both hemispheres 685.7
1959 Male, age 76, both hemispheres 670.0

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1098.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 1098.0
FF:10165-103B3 76 years, female 1392.2
FF:10182-103D2 60 years, female 803.7
Pons
Scaled Tags Per Million: 1026.2
FF:10033-101E6 18-54 years, mixed 1026.2

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 294.1
Pig sample Sample description nTPM
Pons
nTPM: 294.2
Samples: 4

Max nTPM: 341.8
Min nTPM: 240.0
Sample A Female 341.8
Sample B Female 240.0
Sample C Male 276.5
Sample D Male 318.3

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.1
70305443 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 1.1
71924291 Antisense, RP_050609_04_B12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.