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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:225.1 nTPM
GTEx:143.4 nTPM
FANTOM5:127.8 Scaled Tags Per Million
Pig:12.2 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 225.1
Sample id Sample description nTPM
Putamen
nTPM: 225.1
2482 Female, age 94, left hemisphere 254.3
1937 Female, age 91, right hemisphere 226.0
2466 Female, age 79, unknown 222.6
1838 Male, age 80, right hemisphere 222.1
1829 Male, age 74, unknown 219.2
2489 Female, age 72, unknown 218.5
2647 Male, age 75, left hemisphere 212.7

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 143.4
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 143.4
Samples: 205

Max nTPM: 356.2
Min nTPM: 78.2
Std nTPM: 35.0
Median nTPM: 137.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 356.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 256.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 251.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 239.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 225.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 222.7
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 217.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 212.5
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 210.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 209.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 202.9
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 201.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 200.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 198.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 197.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 197.2
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 195.7
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 195.2
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 192.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 192.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 192.3
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 190.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 190.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 187.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 184.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 181.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 181.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 180.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 179.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 176.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 175.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 174.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 174.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 170.7
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 169.8
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 169.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 169.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 168.8
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 166.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 166.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 164.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 164.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 163.9
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 163.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 161.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 161.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 160.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 160.2
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 158.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 158.4
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 158.4
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 157.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 156.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 156.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 155.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 155.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 154.5
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 154.0
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 153.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 152.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 152.7
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 152.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 151.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 151.8
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 151.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 151.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 151.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 151.0
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 151.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 150.9
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 150.6
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 150.0
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 149.9
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 149.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 149.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 149.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 149.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 148.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 147.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 146.8
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 146.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 146.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 145.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 144.6
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 144.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 144.2
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 143.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 143.2
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 143.1
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 142.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 142.4
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 141.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 141.4
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 141.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 140.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 140.0
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 139.4
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 138.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 138.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 137.7
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 137.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 137.5
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 137.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 137.0
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 136.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 136.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 136.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 136.3
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 136.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 135.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 135.0
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 134.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 134.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 134.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 134.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 133.5
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 133.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 133.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 133.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 132.0
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 131.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 130.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 130.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 130.5
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 130.3
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 129.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 129.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 128.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 128.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 127.6
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 127.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 126.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 126.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 125.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 125.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 125.3
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 124.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 123.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 123.5
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 122.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 122.3
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 121.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 121.6
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 121.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 121.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 121.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 120.9
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 120.6
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 120.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 120.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 119.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 118.9
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 118.9
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 118.6
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 118.5
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 118.4
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 117.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 117.0
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 116.2
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 115.7
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 115.7
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 115.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 115.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 115.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 114.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 114.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 113.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 113.2
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 113.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 112.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 112.3
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 112.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 112.0
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 111.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 111.0
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 110.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 109.5
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 109.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 108.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 108.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 108.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 108.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 107.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 107.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 106.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 106.5
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 106.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 105.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 105.3
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 105.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 105.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 105.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 103.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 103.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 103.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 102.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 102.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 101.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 100.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 99.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 90.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 88.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 80.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 78.2
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 127.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 127.8
FF:10176-103C5 60 years, female 127.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.2
Pig sample Sample description nTPM
Putamen
nTPM: 12.2
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.6
Sample A Female 15.5
Sample B Female 9.6
Sample C Male 11.6
Sample D Male 12.0

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