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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:55.1 nTPM
GTEx:61.7 nTPM
FANTOM5:58.8 Scaled Tags Per Million
Pig:38.3 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 55.1
Sample id Sample description nTPM
Putamen
nTPM: 55.1
1937 Female, age 91, right hemisphere 59.5
1838 Male, age 80, right hemisphere 57.3
2482 Female, age 94, left hemisphere 56.7
2466 Female, age 79, unknown 55.5
2647 Male, age 75, left hemisphere 54.4
2489 Female, age 72, unknown 52.1
1829 Male, age 74, unknown 50.1

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 61.7
Samples: 205

Max nTPM: 124.3
Min nTPM: 22.5
Std nTPM: 19.0
Median nTPM: 60.2
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 124.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 117.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 113.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 106.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 105.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 104.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 104.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 100.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 99.5
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 99.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 96.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 96.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 96.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 95.6
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 95.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 94.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 94.4
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 93.8
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 92.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 89.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 87.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 87.3
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 87.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 86.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 86.5
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 86.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 84.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 84.0
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 83.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 83.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 82.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 81.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 80.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 80.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 80.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 79.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 79.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 79.0
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 78.4
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 77.6
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 75.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 74.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 74.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 74.6
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 74.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 74.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 73.9
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 72.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 72.1
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 72.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 71.8
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 71.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 70.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 70.5
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 70.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 69.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 69.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 68.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 68.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 68.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 68.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 67.9
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 67.6
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 67.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 67.3
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 67.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 66.9
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 66.7
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 66.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 66.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 66.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 66.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 65.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 64.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 64.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 64.1
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 64.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 63.9
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 63.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 63.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 63.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 63.7
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 63.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 63.4
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 63.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 62.7
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 62.5
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 62.3
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 62.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 62.3
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 62.0
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 62.0
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 62.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 61.9
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 61.8
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 61.3
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 61.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 60.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 60.8
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 60.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 60.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 60.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 60.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 60.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 59.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 59.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 59.2
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 59.1
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 58.8
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 58.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 58.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 58.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 58.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 58.0
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 57.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 57.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 57.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 56.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 56.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 56.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 56.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 56.3
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 56.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 56.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 56.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 55.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 55.5
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 55.4
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 55.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 54.5
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 54.5
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 54.2
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 54.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 53.7
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 53.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 53.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 52.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 52.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 52.5
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 51.6
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 50.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 49.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 49.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 49.3
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 48.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 48.9
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 48.5
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 48.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 48.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 48.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 48.1
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 47.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 47.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 47.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 47.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 46.8
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 46.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 46.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 46.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 46.4
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 46.3
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 45.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 45.3
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 45.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 45.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 44.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 44.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 44.3
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 44.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 43.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 43.4
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 43.2
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 43.2
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 42.6
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 42.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 42.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 41.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 41.6
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 41.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 41.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 40.9
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 40.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 40.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 40.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 40.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 39.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 39.4
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 39.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 38.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 38.0
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 38.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 37.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 35.9
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 35.5
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 33.3
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 32.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 32.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 32.6
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 30.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 30.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 30.5
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 30.3
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 27.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 24.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 22.5
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 58.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 58.8
FF:10176-103C5 60 years, female 58.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.3
Pig sample Sample description nTPM
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 50.4
Min nTPM: 28.8
Sample A Female 50.4
Sample B Female 28.8
Sample C Male 34.6
Sample D Male 39.2

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