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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:53.8 nTPM
HPA:53.8 nTPM
GTEx:159.0 nTPM
FANTOM5:331.4 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:31.9 nTPM
Allen mouse:18.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 53.8
Sample id Sample description nTPM
Amygdala
nTPM: 36.6
2517 Female, age 94, left hemisphere 40.2
2814 Male, age 76, right hemisphere 37.6
1987 Female, age 91, left hemisphere 36.8
2695 Female, age 67, right hemisphere 34.4
2514 Male, age 75, right hemisphere 33.9
Basal amygdala
nTPM: 53.8
2685 Female, age 94, left hemisphere 71.7
2827 Female, age 67, right hemisphere 67.7
2243 Female, age 91, right hemisphere 54.3
1955 Male, age 76, both hemispheres 45.0
2609 Male, age 75, right hemisphere 42.3
2110 Male, age 80, left hemisphere 41.8
Central amygdala
nTPM: 47.0
2701 Female, age 91, right hemisphere 66.9
2239 Male, age 80, left hemisphere 47.5
2826 Female, age 94, left hemisphere 43.9
1905 Male, age 76, both hemispheres 38.6
2515 Male, age 75, right hemisphere 38.3
Corticomedial amygdala
nTPM: 50.3
2535 Female, age 67, right hemisphere 75.2
2429 Female, age 94, left hemisphere 55.0
2242 Female, age 91, right hemisphere 48.8
2240 Male, age 76, both hemispheres 45.1
2829 Male, age 80, left hemisphere 39.8
2428 Male, age 75, right hemisphere 37.6
Lateral amygdala
nTPM: 52.1
2255 Female, age 91, right hemisphere 74.2
2256 Male, age 80, left hemisphere 67.0
2830 Female, age 67, right hemisphere 56.9
2534 Female, age 94, left hemisphere 45.2
2516 Male, age 75, right hemisphere 37.2
1883 Male, age 76, both hemispheres 32.1
Stria terminalis, bed nucleus
nTPM: 43.2
2201 Male, age 74, unknown 48.3
2486 Female, age 94, both hemispheres 44.0
1974 Female, age 91, both hemispheres 37.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 159.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 159.0
Samples: 152

Max nTPM: 319.2
Min nTPM: 8.6
Std nTPM: 60.1
Median nTPM: 162.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 319.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 304.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 292.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 291.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 282.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 281.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 260.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 258.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 255.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 253.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 246.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 245.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 244.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 234.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 228.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 224.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 221.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 220.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 220.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 219.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 219.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 219.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 216.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 215.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 214.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 213.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 213.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 211.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 210.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 209.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 208.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 206.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 204.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 201.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 201.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 199.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 197.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 197.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 194.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 193.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 190.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 190.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 190.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 188.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 186.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 186.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 185.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 183.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 183.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 181.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 181.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 179.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 179.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 177.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 177.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 176.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 176.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 174.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 174.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 173.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 172.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 172.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 171.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 170.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 169.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 169.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 166.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 165.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 165.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 165.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 164.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 163.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 162.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 162.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 161.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 161.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 159.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 158.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 158.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 157.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 155.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 154.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 153.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 153.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 151.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 151.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 149.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 148.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 144.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 144.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 144.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 143.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 141.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 140.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 139.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 138.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 135.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 134.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 133.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 132.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 131.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 131.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 130.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 127.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 124.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 122.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 121.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 121.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 120.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 119.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 119.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 119.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 119.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 118.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 117.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 114.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 109.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 108.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 107.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 107.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 99.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 95.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 95.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 89.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 85.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 78.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 72.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 72.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 68.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 60.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 36.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 29.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 27.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 24.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 23.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 21.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 19.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 18.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 8.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 331.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 331.4
FF:10151-102I7 76 years, female 331.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.8
Pig sample Sample description nTPM
Amygdala
nTPM: 40.8
Samples: 4

Max nTPM: 47.0
Min nTPM: 33.1
Sample A Female 33.1
Sample B Female 47.0
Sample C Male 39.5
Sample D Male 43.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 31.9
Samples: 4

Max nTPM: 46.3
Min nTPM: 24.3
Sample A Male 24.3
Sample B Male 46.3
Sample C Female 25.4
Sample D Female 31.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.1
77620457 Antisense, RP_070129_03_D05, Mouse strain C57BL/6J (56 days, male) 18.1

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