MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.1 nTPM
HPA:53.1 nTPM
GTEx:159.8 nTPM
FANTOM5:379.2 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:23.8 nTPM
Allen mouse:15.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.0
1830 Male, age 51, unknown 55.8
1833 Male, age 53, unknown 52.3
2666 Male, age 74, left hemisphere 50.3
2586 Male, age 75, left hemisphere 49.2
2219 Male, age 76, both hemispheres 48.9
2828 Female, age 72, unknown 47.6
2019 Male, age 18, unknown 44.0
1870 Female, age 42, unknown 41.6
2411 Female, age 72, unknown 41.1
1827 Male, age 72, unknown 39.4
Dorsal raphe nucleus
nTPM: 37.4
2750 Male, age 76, both hemispheres 44.4
2016 Female, age 72, unknown 37.8
1828 Male, age 53, unknown 36.5
2047 Male, age 72, unknown 35.1
2298 Female, age 72, unknown 33.2
Inferior colliculus
nTPM: 39.0
2849 Male, age 72, unknown 53.9
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 33.8
2097 Female, age 72, unknown 29.6
Median raphe nucleus
nTPM: 45.6
2220 Male, age 76, midline 45.6
Pedunculopontine tegmental nucleus
nTPM: 46.5
2338 Male, age 61, both hemispheres 57.1
2334 Male, age 80, both hemispheres 43.8
1921 Female, age 85, both hemispheres 38.5
Periaquaductal grey, anterior
nTPM: 36.8
1795 Male, age 51, unknown 38.2
1947 Male, age 18, unknown 36.5
2502 Female, age 75, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 44.9
2850 Male, age 76, both hemispheres 55.9
1831 Male, age 72, unknown 46.4
2464 Female, age 72, unknown 44.2
1840 Male, age 53, unknown 33.0
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 59.4
2140 Male, age 76, both hemispheres 55.1
2053 Male, age 18, unknown 44.7
Pretectal area
nTPM: 42.2
2407 Male, age 75, both hemispheres 57.0
2316 Male, age 76, right hemisphere 56.9
2667 Female, age 75, unknown 47.6
2273 Male, age 74, both hemispheres 45.7
2825 Male, age 18, unknown 43.2
1815 Male, age 53, unknown 41.9
2224 Female, age 72, unknown 39.8
1816 Male, age 51, unknown 35.6
1944 Female, age 72, unknown 34.2
2007 Male, age 72, unknown 32.2
1817 Female, age 42, unknown 30.3
Red nucleus
nTPM: 50.6
2823 Male, age 76, right hemisphere 61.4
2769 Male, age 72, unknown 58.4
2588 Male, age 74, left hemisphere 57.4
1904 Male, age 53, unknown 56.2
2584 Male, age 75, left hemisphere 55.7
2227 Male, age 72, unknown 55.2
1865 Male, age 51, unknown 55.1
2785 Male, age 18, unknown 50.4
2503 Female, age 72, unknown 43.6
2725 Female, age 75, unknown 41.7
1954 Female, age 42, unknown 38.4
1821 Female, age 72, unknown 33.8
Substantia nigra
nTPM: 40.3
2699 Male, age 18, unknown 55.4
2583 Male, age 75, right hemisphere 51.2
2590 Female, age 75, unknown 48.7
2665 Male, age 74, both hemispheres 46.7
1941 Male, age 53, unknown 39.2
1851 Male, age 51, unknown 37.7
2409 Female, age 72, unknown 35.3
1889 Female, age 72, unknown 32.9
1916 Female, age 42, unknown 30.1
2241 Male, age 72, unknown 26.2
Superior colliculus
nTPM: 45.2
1913 Female, age 42, unknown 66.0
1995 Male, age 72, unknown 55.3
2664 Male, age 75, both hemispheres 46.6
1895 Male, age 76, right hemisphere 45.1
1839 Male, age 51, unknown 42.9
2087 Female, age 72, unknown 41.8
1796 Male, age 53, unknown 39.4
2587 Male, age 74, left hemisphere 39.0
2668 Female, age 75, unknown 38.6
2261 Male, age 18, unknown 37.8
Ventral tegmental area
nTPM: 41.1
2021 Male, age 53, unknown 48.5
2223 Female, age 72, unknown 45.3
2218 Male, age 76, both hemispheres 42.9
2410 Female, age 72, unknown 38.2
1942 Male, age 51, unknown 37.3
1915 Female, age 42, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 159.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 159.8
Samples: 139

Max nTPM: 468.9
Min nTPM: 52.5
Std nTPM: 59.5
Median nTPM: 161.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 468.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 323.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 316.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 293.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 290.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 290.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 281.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 252.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 245.3
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 231.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 228.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 379.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 379.2
FF:10158-103A5 76 years, female 379.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.0
Pig sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 48.9
Min nTPM: 31.3
Sample A Female 34.2
Sample B Female 48.9
Sample C Male 31.3
Sample D Male 42.2
Periaqueductal gray
nTPM: 41.6
Samples: 3

Max nTPM: 48.8
Min nTPM: 36.9
Sample B Female 39.0
Sample C Male 36.9
Sample D Male 48.8
Substantia nigra
nTPM: 51.0
Samples: 4

Max nTPM: 83.4
Min nTPM: 23.7
Sample A Female 23.7
Sample B Female 51.8
Sample C Male 44.9
Sample D Male 83.4
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 50.8
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 37.8
Sample C Male 34.4
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 33.7
Min nTPM: 19.2
Sample A Male 33.7
Sample B Male 21.6
Sample C Female 20.6
Sample D Female 19.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.0
77620457 Antisense, RP_070129_03_D05, Mouse strain C57BL/6J (56 days, male) 15.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.