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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:253.5 nTPM
HPA:253.5 nTPM
GTEx:361.4 nTPM
FANTOM5:151.9 Scaled Tags Per Million
Pig:84.0 nTPM
Mouse:800.4 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 253.5
Sample id Sample description nTPM
Amygdala
nTPM: 253.5
2814 Male, age 76, right hemisphere 272.4
2514 Male, age 75, right hemisphere 254.9
1987 Female, age 91, left hemisphere 253.2
2695 Female, age 67, right hemisphere 246.2
2517 Female, age 94, left hemisphere 240.6
Basal amygdala
nTPM: 240.7
2110 Male, age 80, left hemisphere 249.0
2609 Male, age 75, right hemisphere 249.0
1955 Male, age 76, both hemispheres 242.4
2243 Female, age 91, right hemisphere 238.9
2685 Female, age 94, left hemisphere 238.9
2827 Female, age 67, right hemisphere 226.3
Central amygdala
nTPM: 244.8
1905 Male, age 76, both hemispheres 255.6
2826 Female, age 94, left hemisphere 249.6
2515 Male, age 75, right hemisphere 241.1
2239 Male, age 80, left hemisphere 240.4
2701 Female, age 91, right hemisphere 237.6
Corticomedial amygdala
nTPM: 241.4
2829 Male, age 80, left hemisphere 251.1
2428 Male, age 75, right hemisphere 245.2
2240 Male, age 76, both hemispheres 244.5
2242 Female, age 91, right hemisphere 243.9
2429 Female, age 94, left hemisphere 240.4
2535 Female, age 67, right hemisphere 223.5
Lateral amygdala
nTPM: 239.4
1883 Male, age 76, both hemispheres 257.2
2516 Male, age 75, right hemisphere 251.6
2534 Female, age 94, left hemisphere 239.5
2255 Female, age 91, right hemisphere 231.0
2256 Male, age 80, left hemisphere 229.5
2830 Female, age 67, right hemisphere 227.5
Stria terminalis, bed nucleus
nTPM: 249.3
1974 Female, age 91, both hemispheres 263.3
2201 Male, age 74, unknown 243.5
2486 Female, age 94, both hemispheres 241.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 361.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 361.4
Samples: 152

Max nTPM: 1056.1
Min nTPM: 167.6
Std nTPM: 142.3
Median nTPM: 337.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1056.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 981.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 972.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 927.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 676.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 640.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 582.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 563.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 560.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 552.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 549.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 543.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 540.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 531.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 516.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 505.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 497.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 490.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 483.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 475.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 474.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 462.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 461.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 458.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 452.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 448.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 447.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 446.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 445.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 439.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 434.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 430.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 427.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 409.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 409.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 409.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 409.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 408.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 403.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 403.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 398.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 398.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 396.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 395.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 395.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 391.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 390.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 390.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 390.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 389.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 385.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 384.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 381.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 379.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 376.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 367.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 366.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 366.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 365.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 365.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 365.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 363.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 357.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 355.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 352.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 352.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 350.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 350.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 350.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 346.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 345.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 344.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 343.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 342.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 339.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 338.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 335.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 335.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 334.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 333.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 331.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 330.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 327.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 327.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 327.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 325.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 323.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 316.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 314.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 313.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 310.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 300.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 300.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 300.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 299.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 299.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 299.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 299.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 297.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 290.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 290.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 290.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 290.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 289.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 287.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 285.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 284.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 283.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 283.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 279.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 278.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 274.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 272.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 271.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 271.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 270.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 267.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 266.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 266.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 262.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 258.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 256.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 252.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 251.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 248.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 246.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 244.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 240.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 239.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 239.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 237.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 236.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 233.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 233.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 232.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 228.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 228.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 228.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 226.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 223.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 218.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 216.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 212.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 209.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 205.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 201.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 200.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 199.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 198.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 191.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 167.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 151.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.9
FF:10151-102I7 76 years, female 151.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 84.0
Pig sample Sample description nTPM
Amygdala
nTPM: 84.0
Samples: 4

Max nTPM: 115.2
Min nTPM: 68.7
Sample A Female 115.2
Sample B Female 81.9
Sample C Male 70.3
Sample D Male 68.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 800.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 800.5
Samples: 4

Max nTPM: 818.5
Min nTPM: 762.4
Sample A Male 762.4
Sample B Male 816.6
Sample C Female 818.5
Sample D Female 804.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 17.0
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 14.2

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