MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:256.9 nTPM
HPA:256.9 nTPM
GTEx:318.1 nTPM
FANTOM5:133.5 Scaled Tags Per Million
Pig:175.5 nTPM
Mouse:981.2 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 256.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 246.3
1827 Male, age 72, unknown 257.1
2019 Male, age 18, unknown 253.7
2411 Female, age 72, unknown 250.7
1870 Female, age 42, unknown 248.1
1833 Male, age 53, unknown 246.5
2666 Male, age 74, left hemisphere 244.7
2828 Female, age 72, unknown 244.3
2219 Male, age 76, both hemispheres 243.6
1830 Male, age 51, unknown 243.2
2586 Male, age 75, left hemisphere 230.5
Dorsal raphe nucleus
nTPM: 248.3
2298 Female, age 72, unknown 257.5
1828 Male, age 53, unknown 252.3
2750 Male, age 76, both hemispheres 247.1
2047 Male, age 72, unknown 242.3
2016 Female, age 72, unknown 242.2
Inferior colliculus
nTPM: 253.5
2097 Female, age 72, unknown 263.0
1890 Male, age 53, unknown 251.9
2849 Male, age 72, unknown 249.7
1848 Female, age 42, unknown 249.5
Median raphe nucleus
nTPM: 245.6
2220 Male, age 76, midline 245.6
Pedunculopontine tegmental nucleus
nTPM: 256.9
2334 Male, age 80, both hemispheres 258.3
2338 Male, age 61, both hemispheres 257.0
1921 Female, age 85, both hemispheres 255.3
Periaquaductal grey, anterior
nTPM: 248.4
1947 Male, age 18, unknown 251.6
1795 Male, age 51, unknown 249.6
2502 Female, age 75, unknown 244.0
Periaquaductal grey, dorsal
nTPM: 242.8
2850 Male, age 76, both hemispheres 246.3
1831 Male, age 72, unknown 242.5
1840 Male, age 53, unknown 242.1
2464 Female, age 72, unknown 240.1
Periaquaductal grey, lateral
nTPM: 246.5
2272 Male, age 74, both hemispheres 259.3
2053 Male, age 18, unknown 241.2
2140 Male, age 76, both hemispheres 238.9
Pretectal area
nTPM: 254.5
1817 Female, age 42, unknown 270.5
1816 Male, age 51, unknown 263.8
2007 Male, age 72, unknown 262.3
1944 Female, age 72, unknown 258.5
1815 Male, age 53, unknown 257.7
2273 Male, age 74, both hemispheres 256.4
2667 Female, age 75, unknown 255.1
2224 Female, age 72, unknown 249.6
2825 Male, age 18, unknown 246.8
2316 Male, age 76, right hemisphere 242.9
2407 Male, age 75, both hemispheres 236.0
Red nucleus
nTPM: 248.8
1821 Female, age 72, unknown 269.0
2725 Female, age 75, unknown 257.0
2823 Male, age 76, right hemisphere 252.7
1954 Female, age 42, unknown 250.0
2785 Male, age 18, unknown 249.1
2503 Female, age 72, unknown 248.8
2769 Male, age 72, unknown 247.9
2227 Male, age 72, unknown 246.6
1865 Male, age 51, unknown 243.3
2588 Male, age 74, left hemisphere 243.3
1904 Male, age 53, unknown 242.5
2584 Male, age 75, left hemisphere 235.9
Substantia nigra
nTPM: 252.5
1889 Female, age 72, unknown 267.8
1916 Female, age 42, unknown 264.0
1941 Male, age 53, unknown 257.8
1851 Male, age 51, unknown 256.7
2241 Male, age 72, unknown 256.2
2665 Male, age 74, both hemispheres 251.5
2699 Male, age 18, unknown 248.9
2590 Female, age 75, unknown 245.7
2409 Female, age 72, unknown 244.9
2583 Male, age 75, right hemisphere 231.5
Superior colliculus
nTPM: 245.8
2587 Male, age 74, left hemisphere 260.2
1895 Male, age 76, right hemisphere 253.0
2087 Female, age 72, unknown 251.7
1796 Male, age 53, unknown 250.1
2261 Male, age 18, unknown 247.2
2668 Female, age 75, unknown 246.0
1839 Male, age 51, unknown 245.3
1913 Female, age 42, unknown 237.1
1995 Male, age 72, unknown 236.1
2664 Male, age 75, both hemispheres 231.2
Ventral tegmental area
nTPM: 248.3
2218 Male, age 76, both hemispheres 255.8
1915 Female, age 42, unknown 254.8
2410 Female, age 72, unknown 252.4
2223 Female, age 72, unknown 247.3
1942 Male, age 51, unknown 241.7
2021 Male, age 53, unknown 237.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 318.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 318.1
Samples: 139

Max nTPM: 608.6
Min nTPM: 199.1
Std nTPM: 73.1
Median nTPM: 303.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 608.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 529.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 515.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 497.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 479.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 470.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 466.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 466.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 458.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 457.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 450.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.5
FF:10158-103A5 76 years, female 133.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 175.5
Pig sample Sample description nTPM
Midbrain
nTPM: 154.4
Samples: 4

Max nTPM: 170.2
Min nTPM: 144.6
Sample A Female 152.8
Sample B Female 144.6
Sample C Male 170.2
Sample D Male 150.1
Periaqueductal gray
nTPM: 111.7
Samples: 3

Max nTPM: 116.8
Min nTPM: 102.9
Sample B Female 116.8
Sample C Male 115.4
Sample D Male 102.9
Substantia nigra
nTPM: 138.4
Samples: 4

Max nTPM: 191.0
Min nTPM: 110.2
Sample A Female 191.0
Sample B Female 110.5
Sample C Male 141.7
Sample D Male 110.2
Superior colliculi
nTPM: 175.5
Samples: 4

Max nTPM: 217.1
Min nTPM: 117.1
Sample A Female 217.1
Sample B Female 117.1
Sample C Male 209.4
Sample D Male 158.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 981.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 981.2
Samples: 4

Max nTPM: 1022.6
Min nTPM: 949.1
Sample A Male 1022.6
Sample B Male 949.1
Sample C Female 949.1
Sample D Female 1004.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 11.0
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 8.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.