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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:256.0 nTPM
GTEx:256.0 nTPM
FANTOM5:198.2 Scaled Tags Per Million
Pig:67.3 nTPM
Mouse:1108.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 256.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 256.0
Samples: 105

Max nTPM: 348.7
Min nTPM: 170.3
Std nTPM: 35.7
Median nTPM:
246_1 77 years, male 348.7
375_1 74 years, female 348.5
162_1 79 years, female 326.3
414_1 84 years, female 322.7
413_1 59 years, female 317.5
142_1 61 years, female 315.2
229_1 69 years, female 311.5
466_1 57 years, female 310.9
396_1 62 years, male 308.8
379_1 60 years, male 301.9
126_1 63 years, male 301.1
35_1 74 years, female 298.9
377_1 82 years, female 297.9
313_1 79 years, female 297.7
490_1 67 years, female 297.5
237_1 82 years, male 297.0
265_1 87 years, male 293.1
2_1 77 years, female 292.0
384_1 83 years, male 291.3
386_1 76 years, male 290.3
43_1 64 years, female 287.3
315_1 62 years, female 286.2
153_1 70 years, female 284.6
120_1 70 years, female 282.0
501_1 88 years, male 279.9
6_1 73 years, female 279.8
415_1 77 years, female 279.2
17_1 71 years, male 278.5
177_1 74 years, male 278.4
189_1 76 years, male 276.8
115_1 83 years, male 275.8
4_1 88 years, female 275.1
468_1 89 years, male 275.1
9_1 66 years, female 272.8
319_1 81 years, male 270.3
117_1 61 years, male 270.2
491_1 89 years, female 269.9
324_1 76 years, male 269.1
254_1 77 years, female 268.5
347_1 72 years, male 267.4
145_1 84 years, male 267.1
42_1 85 years, male 267.0
307_1 66 years, female 267.0
389_1 86 years, female 266.7
18_1 88 years, male 266.2
499_1 55 years, female 265.4
394_1 75 years, female 265.3
243_1 75 years, male 262.3
109_1 81 years, female 262.2
217_1 76 years, male 260.7
447_1 81 years, male 260.2
321_1 62 years, female 259.3
376_1 75 years, female 258.2
526_1 61 years, male 255.4
404_1 82 years, female 251.2
452_1 88 years, female 249.9
266_1 85 years, male 248.3
172_1 72 years, female 248.2
518_1 75 years, female 248.0
139_1 64 years, female 245.3
335_1 73 years, female 243.7
119_1 70 years, female 243.2
32_1 67 years, male 242.6
163_1 78 years, male 242.5
264_1 73 years, female 242.3
149_1 88 years, male 240.8
355_1 70 years, female 239.7
311_1 78 years, male 239.0
218_1 71 years, female 238.9
288_1 66 years, female 237.9
425_1 59 years, female 237.7
89_1 63 years, male 237.2
506_1 65 years, male 236.6
137_1 83 years, male 234.9
81_1 67 years, male 233.6
350_1 84 years, female 233.4
322_1 76 years, male 232.4
480_1 63 years, male 231.1
316_1 62 years, male 230.5
173_1 67 years, male 230.3
286_1 68 years, female 228.0
354_1 81 years, female 225.6
503_1 68 years, male 223.1
517_1 88 years, male 222.9
405_1 91 years, male 222.3
495_1 57 years, female 220.6
352_1 62 years, male 220.5
251_1 78 years, male 220.2
291_1 76 years, male 218.2
353_1 82 years, female 217.9
348_1 84 years, male 217.2
406_1 79 years, male 216.7
308_1 70 years, female 214.7
349_1 83 years, male 211.9
99_1 64 years, male 211.0
293_1 68 years, female 209.2
295_1 61 years, female 207.9
318_1 68 years, male 207.9
351_1 91 years, male 203.5
314_1 67 years, male 202.9
356_1 87 years, female 202.0
317_1 60 years, male 195.7
320_1 89 years, female 192.0
292_1 71 years, male 182.5
41_1 94 years, female 170.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 198.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 198.2
FF:10030-101E3 24-65 years, mixed 198.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.3
Pig sample Sample description nTPM
Retina
nTPM: 67.3
Samples: 4

Max nTPM: 70.1
Min nTPM: 64.3
Sample A Female 66.5
Sample B Female 68.3
Sample C Male 70.1
Sample D Male 64.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1108.5
Mouse sample Sample description nTPM
Retina
nTPM: 1108.5
Samples: 4

Max nTPM: 1248.7
Min nTPM: 1007.3
Sample A Male 1135.2
Sample B Male 1007.3
Sample C Female 1248.7
Sample D Female 1042.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.