MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5812.4 nTPM
HPA:5812.4 nTPM
GTEx:5757.6 nTPM
FANTOM5:213.1 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:2960.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5812.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5715.1
2666 Male, age 74, left hemisphere 6419.9
2586 Male, age 75, left hemisphere 6178.9
1870 Female, age 42, unknown 5983.6
2828 Female, age 72, unknown 5944.3
1830 Male, age 51, unknown 5817.0
1833 Male, age 53, unknown 5658.4
2411 Female, age 72, unknown 5626.3
2019 Male, age 18, unknown 5397.9
1827 Male, age 72, unknown 5277.3
2219 Male, age 76, both hemispheres 4846.9
Dorsal raphe nucleus
nTPM: 5411.7
2750 Male, age 76, both hemispheres 5595.4
2016 Female, age 72, unknown 5475.8
1828 Male, age 53, unknown 5470.2
2298 Female, age 72, unknown 5346.2
2047 Male, age 72, unknown 5171.1
Inferior colliculus
nTPM: 5440.7
2849 Male, age 72, unknown 5681.5
1848 Female, age 42, unknown 5452.6
1890 Male, age 53, unknown 5391.3
2097 Female, age 72, unknown 5237.3
Median raphe nucleus
nTPM: 5614.5
2220 Male, age 76, midline 5614.5
Pedunculopontine tegmental nucleus
nTPM: 5812.4
2338 Male, age 61, both hemispheres 6577.1
2334 Male, age 80, both hemispheres 5775.1
1921 Female, age 85, both hemispheres 5085.0
Periaquaductal grey, anterior
nTPM: 5263.3
2502 Female, age 75, unknown 5604.6
1795 Male, age 51, unknown 5184.3
1947 Male, age 18, unknown 5000.9
Periaquaductal grey, dorsal
nTPM: 5372.8
2850 Male, age 76, both hemispheres 5633.1
2464 Female, age 72, unknown 5472.6
1831 Male, age 72, unknown 5311.7
1840 Male, age 53, unknown 5073.7
Periaquaductal grey, lateral
nTPM: 5233.5
2140 Male, age 76, both hemispheres 5477.3
2053 Male, age 18, unknown 5234.3
2272 Male, age 74, both hemispheres 4988.9
Pretectal area
nTPM: 5283.0
2825 Male, age 18, unknown 5522.1
2407 Male, age 75, both hemispheres 5519.5
1817 Female, age 42, unknown 5452.3
1815 Male, age 53, unknown 5444.7
2667 Female, age 75, unknown 5437.3
2224 Female, age 72, unknown 5383.9
2007 Male, age 72, unknown 5141.6
1816 Male, age 51, unknown 5127.0
2316 Male, age 76, right hemisphere 5097.0
1944 Female, age 72, unknown 5076.6
2273 Male, age 74, both hemispheres 4910.8
Red nucleus
nTPM: 5734.4
2227 Male, age 72, unknown 6104.6
1865 Male, age 51, unknown 6055.4
2769 Male, age 72, unknown 5991.2
2584 Male, age 75, left hemisphere 5983.0
2785 Male, age 18, unknown 5953.1
1904 Male, age 53, unknown 5909.3
1954 Female, age 42, unknown 5704.9
1821 Female, age 72, unknown 5675.5
2503 Female, age 72, unknown 5540.2
2823 Male, age 76, right hemisphere 5508.6
2725 Female, age 75, unknown 5213.7
2588 Male, age 74, left hemisphere 5172.8
Substantia nigra
nTPM: 5239.7
2699 Male, age 18, unknown 5730.4
1889 Female, age 72, unknown 5420.9
1851 Male, age 51, unknown 5364.5
2665 Male, age 74, both hemispheres 5320.9
1941 Male, age 53, unknown 5317.0
1916 Female, age 42, unknown 5290.2
2583 Male, age 75, right hemisphere 5121.9
2241 Male, age 72, unknown 5054.2
2590 Female, age 75, unknown 4940.6
2409 Female, age 72, unknown 4836.0
Superior colliculus
nTPM: 5647.3
1913 Female, age 42, unknown 6334.2
2664 Male, age 75, both hemispheres 6020.0
2668 Female, age 75, unknown 5971.0
1995 Male, age 72, unknown 5924.7
2587 Male, age 74, left hemisphere 5797.6
1796 Male, age 53, unknown 5515.4
1839 Male, age 51, unknown 5372.3
2087 Female, age 72, unknown 5203.9
2261 Male, age 18, unknown 5184.5
1895 Male, age 76, right hemisphere 5149.2
Ventral tegmental area
nTPM: 5501.4
2223 Female, age 72, unknown 6536.3
1915 Female, age 42, unknown 5503.1
2021 Male, age 53, unknown 5370.2
2218 Male, age 76, both hemispheres 5341.2
1942 Male, age 51, unknown 5332.1
2410 Female, age 72, unknown 4925.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5757.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5757.6
Samples: 139

Max nTPM: 15687.2
Min nTPM: 2207.5
Std nTPM: 2484.4
Median nTPM: 5284.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 15687.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 13066.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12446.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 12350.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 11574.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11288.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 11166.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 11004.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10970.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 10589.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 10336.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 213.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 213.1
FF:10158-103A5 76 years, female 213.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Midbrain
nTPM: 3.7
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 4.5
Sample C Male 3.9
Sample D Male 4.3
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 10.9
Min nTPM: 6.5
Sample B Female 6.7
Sample C Male 6.5
Sample D Male 10.9
Substantia nigra
nTPM: 4.2
Samples: 4

Max nTPM: 6.7
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 4.7
Sample C Male 4.0
Sample D Male 6.7
Superior colliculi
nTPM: 2.5
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.3
Sample A Female 1.3
Sample B Female 1.9
Sample C Male 3.3
Sample D Male 3.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2960.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2960.4
Samples: 4

Max nTPM: 3286.2
Min nTPM: 2812.8
Sample A Male 3286.2
Sample B Male 2862.0
Sample C Female 2812.8
Sample D Female 2880.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.