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FTH1
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:3123.7 nTPM
GTEx:3123.7 nTPM
FANTOM5:136.8 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:1286.4 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3123.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 3123.7
Samples: 105

Max nTPM: 4410.3
Min nTPM: 2244.7
Std nTPM: 481.3
Median nTPM:
307_1 66 years, female 4410.3
495_1 57 years, female 4316.5
308_1 70 years, female 4220.6
375_1 74 years, female 4109.4
526_1 61 years, male 4004.1
377_1 82 years, female 3941.5
319_1 81 years, male 3927.7
311_1 78 years, male 3914.7
2_1 77 years, female 3879.5
480_1 63 years, male 3840.4
189_1 76 years, male 3810.4
389_1 86 years, female 3796.1
414_1 84 years, female 3789.4
316_1 62 years, male 3766.4
384_1 83 years, male 3704.4
246_1 77 years, male 3625.1
386_1 76 years, male 3616.6
447_1 81 years, male 3614.1
237_1 82 years, male 3607.1
394_1 75 years, female 3589.6
322_1 76 years, male 3580.5
415_1 77 years, female 3526.9
6_1 73 years, female 3498.0
379_1 60 years, male 3469.2
17_1 71 years, male 3464.2
396_1 62 years, male 3462.0
35_1 74 years, female 3433.6
229_1 69 years, female 3404.2
405_1 91 years, male 3386.0
321_1 62 years, female 3364.7
376_1 75 years, female 3363.3
425_1 59 years, female 3354.8
315_1 62 years, female 3302.7
266_1 85 years, male 3287.0
99_1 64 years, male 3278.2
354_1 81 years, female 3260.2
218_1 71 years, female 3257.5
518_1 75 years, female 3254.3
120_1 70 years, female 3224.0
313_1 79 years, female 3215.8
172_1 72 years, female 3206.5
466_1 57 years, female 3192.2
352_1 62 years, male 3182.7
452_1 88 years, female 3178.5
324_1 76 years, male 3177.4
347_1 72 years, male 3176.8
126_1 63 years, male 3170.1
137_1 83 years, male 3134.4
499_1 55 years, female 3123.9
406_1 79 years, male 3108.7
335_1 73 years, female 3077.3
320_1 89 years, female 3061.6
173_1 67 years, male 3051.7
353_1 82 years, female 3044.8
251_1 78 years, male 3044.4
117_1 61 years, male 3023.7
348_1 84 years, male 3021.4
243_1 75 years, male 3020.8
288_1 66 years, female 3013.6
139_1 64 years, female 3002.9
286_1 68 years, female 2976.3
265_1 87 years, male 2975.4
349_1 83 years, male 2973.4
291_1 76 years, male 2970.8
318_1 68 years, male 2941.6
501_1 88 years, male 2924.3
4_1 88 years, female 2922.6
153_1 70 years, female 2916.1
81_1 67 years, male 2905.6
177_1 74 years, male 2893.5
295_1 61 years, female 2875.7
254_1 77 years, female 2857.7
351_1 91 years, male 2855.1
350_1 84 years, female 2843.4
293_1 68 years, female 2814.5
468_1 89 years, male 2812.8
490_1 67 years, female 2808.4
145_1 84 years, male 2804.4
404_1 82 years, female 2794.3
163_1 78 years, male 2769.9
142_1 61 years, female 2760.9
356_1 87 years, female 2724.6
355_1 70 years, female 2722.4
115_1 83 years, male 2707.5
162_1 79 years, female 2688.5
41_1 94 years, female 2682.8
413_1 59 years, female 2665.7
292_1 71 years, male 2658.6
264_1 73 years, female 2648.0
43_1 64 years, female 2647.3
314_1 67 years, male 2613.6
503_1 68 years, male 2594.7
119_1 70 years, female 2586.1
9_1 66 years, female 2547.9
18_1 88 years, male 2542.1
109_1 81 years, female 2504.1
217_1 76 years, male 2472.2
491_1 89 years, female 2438.6
517_1 88 years, male 2407.3
317_1 60 years, male 2378.2
89_1 63 years, male 2345.3
32_1 67 years, male 2313.7
149_1 88 years, male 2307.4
42_1 85 years, male 2262.6
506_1 65 years, male 2244.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 136.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 136.8
FF:10030-101E3 24-65 years, mixed 136.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.2
Pig sample Sample description nTPM
Retina
nTPM: 9.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 6.9
Sample A Female 11.3
Sample B Female 7.0
Sample C Male 6.9
Sample D Male 11.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1286.4
Mouse sample Sample description nTPM
Retina
nTPM: 1286.4
Samples: 4

Max nTPM: 1522.4
Min nTPM: 1096.8
Sample A Male 1387.0
Sample B Male 1139.4
Sample C Female 1522.4
Sample D Female 1096.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.