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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:6506.2 nTPM
HPA:6506.2 nTPM
GTEx:9555.6 nTPM
FANTOM5:235.8 Scaled Tags Per Million
Pig:3.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 6506.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 5931.4
1981 Female, age 72, midline 6231.2
2565 Male, age 75, midline 6146.6
2194 Female, age 79, both hemispheres 5851.2
2816 Male, age 47, midline 5740.4
2048 Male, age 55, midline 5687.5
Cervical spinal cord, dorsal horn
nTPM: 5733.9
2173 Female, age 72, unknown 6491.9
2296 Male, age 66, both hemispheres 5985.1
2069 Male, age 47, both hemispheres 5944.9
1877 Male, age 55, unknown 5687.9
2721 Male, age 90, both hemispheres 5186.3
2297 Male, age 75, both hemispheres 5107.3
Cervical spinal cord, ventral horn
nTPM: 6506.2
2809 Male, age 90, both hemispheres 7246.3
2480 Male, age 75, both hemispheres 7123.3
2295 Male, age 66, both hemispheres 6470.5
2098 Female, age 72, unknown 6241.1
2068 Male, age 55, unknown 6103.3
2820 Female, age 79, both hemispheres 5852.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9555.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9555.6
Samples: 159

Max nTPM: 22540.2
Min nTPM: 3830.1
Std nTPM: 3403.6
Median nTPM: 9013.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 22540.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 22184.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 19061.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 18405.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 17533.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 16253.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 16201.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 16012.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 15867.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 15736.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 14796.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 14668.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 14662.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 14580.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 14533.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 14502.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 14001.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 13902.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13846.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 13651.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 13647.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 13581.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 13277.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 13230.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 13216.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 12968.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 12889.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 12554.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 12454.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 12386.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 12347.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 11916.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 11806.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 11763.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 11699.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 11653.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 11541.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 11328.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11293.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 11251.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 11222.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 11216.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 11107.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 11035.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 11020.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 10976.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 10964.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 10797.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 10596.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 10532.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 10509.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 10271.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 10223.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 10219.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 10127.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 10029.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 9897.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 9895.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9876.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9842.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 9791.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 9696.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 9674.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 9621.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 9617.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9524.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 9428.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9400.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9350.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 9340.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 9336.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9300.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 9292.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 9267.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 9256.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 9175.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 9123.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 9069.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 9043.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 9013.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 9006.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8971.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 8949.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8938.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 8866.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8774.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 8702.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 8674.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 8597.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8585.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 8525.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8490.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 8445.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8346.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 8301.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 8281.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 8251.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 8183.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 8174.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 8099.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 8014.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 8009.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7910.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7782.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7772.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 7722.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7684.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 7607.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 7595.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 7453.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7450.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 7446.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 7385.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 7328.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 7263.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 7172.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 7084.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 7080.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 7027.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6995.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6990.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6962.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6929.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 6918.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6896.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 6847.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6824.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 6793.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6774.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 6709.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6601.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6571.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 6477.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6421.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 6408.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6334.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 6320.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6237.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 6205.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 6165.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 6108.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6100.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 5953.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5761.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 5712.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 5678.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5609.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 5538.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 5314.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 5211.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 5061.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4977.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4797.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4656.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4645.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 4613.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 4583.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 4404.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 3830.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 235.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 235.8
FF:10181-103D1 60 years, female 302.5
FF:10159-103A6 76 years, female 169.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 3.6
Samples: 4

Max nTPM: 4.4
Min nTPM: 1.8
Sample A Female 4.2
Sample B Female 4.1
Sample C Male 1.8
Sample D Male 4.4
Ventral spinal cord
nTPM: 3.3
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.5
Sample A Female 3.6
Sample B Female 2.5
Sample C Male 2.6
Sample D Male 4.3

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