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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:145.5 nTPM
HPA:145.5 nTPM
GTEx:148.0 nTPM
FANTOM5:288.1 Scaled Tags Per Million
Pig:51.3 nTPM
Mouse:111.8 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 145.5
Sample id Sample description nTPM
Amygdala
nTPM: 145.5
2814 Male, age 76, right hemisphere 150.3
2514 Male, age 75, right hemisphere 147.0
1987 Female, age 91, left hemisphere 146.0
2517 Female, age 94, left hemisphere 142.5
2695 Female, age 67, right hemisphere 141.7
Basal amygdala
nTPM: 131.4
2609 Male, age 75, right hemisphere 143.1
2110 Male, age 80, left hemisphere 134.9
1955 Male, age 76, both hemispheres 133.5
2685 Female, age 94, left hemisphere 131.0
2243 Female, age 91, right hemisphere 123.9
2827 Female, age 67, right hemisphere 122.1
Central amygdala
nTPM: 137.8
2826 Female, age 94, left hemisphere 149.3
1905 Male, age 76, both hemispheres 140.4
2515 Male, age 75, right hemisphere 138.8
2239 Male, age 80, left hemisphere 131.8
2701 Female, age 91, right hemisphere 128.8
Corticomedial amygdala
nTPM: 128.9
2428 Male, age 75, right hemisphere 135.6
2829 Male, age 80, left hemisphere 135.2
2429 Female, age 94, left hemisphere 128.5
2242 Female, age 91, right hemisphere 127.6
2240 Male, age 76, both hemispheres 125.6
2535 Female, age 67, right hemisphere 120.7
Lateral amygdala
nTPM: 135.0
2534 Female, age 94, left hemisphere 142.0
1883 Male, age 76, both hemispheres 140.5
2516 Male, age 75, right hemisphere 140.1
2256 Male, age 80, left hemisphere 136.6
2255 Female, age 91, right hemisphere 127.0
2830 Female, age 67, right hemisphere 124.2
Stria terminalis, bed nucleus
nTPM: 132.1
1974 Female, age 91, both hemispheres 140.3
2201 Male, age 74, unknown 130.3
2486 Female, age 94, both hemispheres 125.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 148.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.0
Samples: 152

Max nTPM: 320.0
Min nTPM: 95.1
Std nTPM: 32.6
Median nTPM: 140.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 320.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 282.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 266.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 255.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 239.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 220.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 218.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 211.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 199.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 191.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 187.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 186.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 186.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 184.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 184.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 182.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 182.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 180.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 178.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 177.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 176.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 171.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 169.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 168.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 168.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 165.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 163.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 163.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 162.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 162.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 162.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 162.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 160.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 160.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 159.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 159.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 158.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 156.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 156.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 154.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 153.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 153.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 153.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 153.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 153.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 151.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 151.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 149.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 148.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 148.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 147.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 147.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 147.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 147.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 146.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 146.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 146.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 145.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 145.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 145.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 144.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 143.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 143.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 142.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 141.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 141.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 141.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 140.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 140.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 139.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 139.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 139.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 139.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 139.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 139.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 138.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 138.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 138.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 137.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 137.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 137.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 137.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 135.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 135.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 135.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 135.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 135.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 135.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 134.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 134.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 133.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 133.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 132.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 131.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 131.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 130.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 130.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 129.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 129.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 128.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 128.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 128.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 127.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 127.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 127.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 127.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 126.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 126.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 125.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 125.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 124.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 124.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 124.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 123.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 122.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 121.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 120.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 120.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 119.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 119.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 119.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 118.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 118.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 117.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 116.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 116.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 115.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 112.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 111.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 109.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 107.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 103.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 100.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 95.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 288.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 288.1
FF:10151-102I7 76 years, female 288.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.3
Pig sample Sample description nTPM
Amygdala
nTPM: 51.4
Samples: 4

Max nTPM: 70.0
Min nTPM: 42.1
Sample A Female 70.0
Sample B Female 46.9
Sample C Male 42.1
Sample D Male 46.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 111.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 111.8
Samples: 4

Max nTPM: 121.5
Min nTPM: 103.6
Sample A Male 116.8
Sample B Male 105.4
Sample C Female 121.5
Sample D Female 103.6

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