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PCBP1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:163.8 nTPM
HPA:163.8 nTPM
GTEx:189.5 nTPM
FANTOM5:317.7 Scaled Tags Per Million
Pig:109.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 163.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 153.2
1981 Female, age 72, midline 168.9
2565 Male, age 75, midline 157.4
2194 Female, age 79, both hemispheres 149.8
2816 Male, age 47, midline 145.2
2048 Male, age 55, midline 144.7
Cervical spinal cord, dorsal horn
nTPM: 163.8
2296 Male, age 66, both hemispheres 181.5
2173 Female, age 72, unknown 180.4
2069 Male, age 47, both hemispheres 171.2
1877 Male, age 55, unknown 155.6
2297 Male, age 75, both hemispheres 149.5
2721 Male, age 90, both hemispheres 144.8
Cervical spinal cord, ventral horn
nTPM: 158.2
2098 Female, age 72, unknown 178.8
2809 Male, age 90, both hemispheres 164.7
2068 Male, age 55, unknown 154.4
2480 Male, age 75, both hemispheres 154.0
2295 Male, age 66, both hemispheres 153.1
2820 Female, age 79, both hemispheres 143.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 189.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.5
Samples: 159

Max nTPM: 412.1
Min nTPM: 124.8
Std nTPM: 38.7
Median nTPM: 183.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 412.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 334.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 308.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 307.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 295.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 278.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 278.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 274.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 254.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 251.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 245.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 244.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 241.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 240.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 235.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 229.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 228.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 227.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 227.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 224.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 223.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 221.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 218.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 217.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 214.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 213.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 212.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 211.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 209.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 209.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 209.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 208.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 207.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 206.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 206.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 206.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 206.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 205.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 205.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 204.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 204.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 203.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 201.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 199.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 199.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 198.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 196.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 196.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 195.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 195.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 194.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 194.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 192.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 191.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 191.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 190.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 190.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 190.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 190.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 189.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 189.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 189.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 188.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 188.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 187.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 187.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 187.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 186.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 185.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 185.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 185.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 184.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 184.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 184.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 184.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 184.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 184.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 184.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 183.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 183.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 182.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 182.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 182.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 182.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 181.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 181.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 179.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 179.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 178.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 178.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 177.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 177.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 176.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 176.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 176.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 176.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 175.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 173.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 173.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 171.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 171.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 171.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 171.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 170.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 170.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 170.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 170.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 169.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 169.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 169.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 169.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 168.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 167.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 167.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 167.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 166.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 165.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 165.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 165.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 164.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 164.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 161.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 161.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 161.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 161.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 161.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 160.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 160.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 159.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 159.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 158.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 158.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 157.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 156.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 155.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 155.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 155.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 154.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 153.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 153.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 153.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 151.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 151.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 148.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 148.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 146.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 142.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 141.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 140.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 140.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 139.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 131.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 124.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 317.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 317.7
FF:10181-103D1 60 years, female 359.6
FF:10159-103A6 76 years, female 275.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 109.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 100.8
Samples: 4

Max nTPM: 126.2
Min nTPM: 87.5
Sample A Female 87.5
Sample B Female 92.0
Sample C Male 126.2
Sample D Male 97.3
Ventral spinal cord
nTPM: 109.1
Samples: 4

Max nTPM: 121.5
Min nTPM: 98.6
Sample A Female 107.2
Sample B Female 109.1
Sample C Male 121.5
Sample D Male 98.6

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