MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:146.9 nTPM
HPA:146.9 nTPM
GTEx:149.7 nTPM
FANTOM5:364.6 Scaled Tags Per Million
Pig:97.0 nTPM
Mouse:85.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 146.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 141.1
1870 Female, age 42, unknown 151.7
2019 Male, age 18, unknown 145.9
1833 Male, age 53, unknown 144.8
1830 Male, age 51, unknown 143.8
2411 Female, age 72, unknown 142.0
2828 Female, age 72, unknown 140.7
1827 Male, age 72, unknown 140.4
2586 Male, age 75, left hemisphere 136.6
2666 Male, age 74, left hemisphere 133.1
2219 Male, age 76, both hemispheres 131.6
Dorsal raphe nucleus
nTPM: 144.3
2298 Female, age 72, unknown 151.0
2750 Male, age 76, both hemispheres 146.3
1828 Male, age 53, unknown 144.5
2047 Male, age 72, unknown 140.0
2016 Female, age 72, unknown 139.5
Inferior colliculus
nTPM: 143.1
2097 Female, age 72, unknown 145.0
1848 Female, age 42, unknown 143.1
1890 Male, age 53, unknown 142.2
2849 Male, age 72, unknown 142.0
Median raphe nucleus
nTPM: 145.7
2220 Male, age 76, midline 145.7
Pedunculopontine tegmental nucleus
nTPM: 145.7
2334 Male, age 80, both hemispheres 150.2
2338 Male, age 61, both hemispheres 146.2
1921 Female, age 85, both hemispheres 140.6
Periaquaductal grey, anterior
nTPM: 140.7
1947 Male, age 18, unknown 143.2
2502 Female, age 75, unknown 142.5
1795 Male, age 51, unknown 136.3
Periaquaductal grey, dorsal
nTPM: 136.9
2850 Male, age 76, both hemispheres 142.8
1831 Male, age 72, unknown 138.0
1840 Male, age 53, unknown 134.4
2464 Female, age 72, unknown 132.5
Periaquaductal grey, lateral
nTPM: 140.5
2272 Male, age 74, both hemispheres 150.1
2140 Male, age 76, both hemispheres 137.2
2053 Male, age 18, unknown 134.2
Pretectal area
nTPM: 142.4
2273 Male, age 74, both hemispheres 148.0
1817 Female, age 42, unknown 147.3
2007 Male, age 72, unknown 145.4
2667 Female, age 75, unknown 144.4
1944 Female, age 72, unknown 143.1
2224 Female, age 72, unknown 142.9
1816 Male, age 51, unknown 141.4
1815 Male, age 53, unknown 141.1
2316 Male, age 76, right hemisphere 139.0
2825 Male, age 18, unknown 138.3
2407 Male, age 75, both hemispheres 135.9
Red nucleus
nTPM: 146.9
1821 Female, age 72, unknown 158.2
1904 Male, age 53, unknown 151.9
2785 Male, age 18, unknown 151.8
2769 Male, age 72, unknown 150.4
1954 Female, age 42, unknown 149.0
1865 Male, age 51, unknown 148.9
2227 Male, age 72, unknown 147.8
2503 Female, age 72, unknown 146.0
2725 Female, age 75, unknown 142.9
2823 Male, age 76, right hemisphere 141.3
2584 Male, age 75, left hemisphere 138.9
2588 Male, age 74, left hemisphere 135.3
Substantia nigra
nTPM: 141.5
1916 Female, age 42, unknown 148.6
1889 Female, age 72, unknown 146.6
1851 Male, age 51, unknown 145.2
2665 Male, age 74, both hemispheres 144.3
2583 Male, age 75, right hemisphere 142.9
1941 Male, age 53, unknown 142.0
2590 Female, age 75, unknown 140.6
2699 Male, age 18, unknown 139.9
2241 Male, age 72, unknown 133.6
2409 Female, age 72, unknown 130.9
Superior colliculus
nTPM: 141.8
1913 Female, age 42, unknown 148.3
1995 Male, age 72, unknown 146.7
2587 Male, age 74, left hemisphere 146.5
1796 Male, age 53, unknown 142.8
2668 Female, age 75, unknown 142.0
2261 Male, age 18, unknown 141.2
1839 Male, age 51, unknown 140.8
1895 Male, age 76, right hemisphere 139.7
2087 Female, age 72, unknown 137.8
2664 Male, age 75, both hemispheres 131.9
Ventral tegmental area
nTPM: 142.4
2223 Female, age 72, unknown 148.6
2410 Female, age 72, unknown 145.6
1915 Female, age 42, unknown 143.9
2218 Male, age 76, both hemispheres 140.4
1942 Male, age 51, unknown 139.7
2021 Male, age 53, unknown 136.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 149.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 149.7
Samples: 139

Max nTPM: 324.8
Min nTPM: 93.1
Std nTPM: 34.1
Median nTPM: 142.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 324.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 313.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 267.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 241.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 230.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 226.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 217.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 216.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 216.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 198.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 193.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 364.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 364.6
FF:10158-103A5 76 years, female 364.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.0
Pig sample Sample description nTPM
Midbrain
nTPM: 88.1
Samples: 4

Max nTPM: 125.0
Min nTPM: 75.0
Sample A Female 125.0
Sample B Female 77.1
Sample C Male 75.0
Sample D Male 75.3
Periaqueductal gray
nTPM: 75.1
Samples: 3

Max nTPM: 80.3
Min nTPM: 70.0
Sample B Female 75.0
Sample C Male 80.3
Sample D Male 70.0
Substantia nigra
nTPM: 81.8
Samples: 4

Max nTPM: 95.3
Min nTPM: 73.1
Sample A Female 95.3
Sample B Female 73.1
Sample C Male 78.4
Sample D Male 80.4
Superior colliculi
nTPM: 97.0
Samples: 4

Max nTPM: 113.2
Min nTPM: 81.8
Sample A Female 113.2
Sample B Female 104.5
Sample C Male 88.4
Sample D Male 81.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.2
Samples: 4

Max nTPM: 90.2
Min nTPM: 82.9
Sample A Male 90.2
Sample B Male 83.4
Sample C Female 82.9
Sample D Female 84.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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