BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:104.5 nTPM
HPA:104.5 nTPM
GTEx:95.8 nTPM
FANTOM5:1.2 Scaled Tags Per Million
Mouse:159.2 nTPM
Allen mouse:3.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA001666
Glial cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 104.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 97.0
2846 Female, age 79, unknown 105.1
2481 Female, age 94, left hemisphere 101.5
2290 Female, age 72, unknown 99.3
1857 Female, age 85, left hemisphere 98.9
2288 Male, age 75, left hemisphere 96.8
1781 Male, age 74, unknown 93.3
2289 Male, age 61, right hemisphere 91.9
1854 Male, age 80, left hemisphere 89.0
Claustrum
nTPM: 98.1
2292 Female, age 85, both hemispheres 109.9
1956 Male, age 74, unknown 105.1
2284 Female, age 91, both hemispheres 98.8
2392 Female, age 94, both hemispheres 95.7
2491 Male, age 75, both hemispheres 95.7
2568 Male, age 61, both hemispheres 95.2
2196 Female, age 79, unknown 94.7
2198 Male, age 80, both hemispheres 94.7
2645 Female, age 72, unknown 93.4
Globus pallidus, externus
nTPM: 101.5
2567 Female, age 72, unknown 113.4
2646 Male, age 61, right hemisphere 104.8
2395 Male, age 75, both hemispheres 103.4
1996 Male, age 80, right hemisphere 94.1
2772 Female, age 79, unknown 91.9
Globus pallidus, internus
nTPM: 104.5
2287 Male, age 75, right hemisphere 112.6
2566 Female, age 72, unknown 112.4
2483 Female, age 94, right hemisphere 111.2
2111 Female, age 85, right hemisphere 101.1
1818 Male, age 74, unknown 99.0
2037 Male, age 80, right hemisphere 98.1
2778 Female, age 91, both hemispheres 97.3
Nucleus accumbens
nTPM: 97.1
2698 Female, age 72, unknown 107.9
2391 Female, age 94, left hemisphere 107.8
2286 Male, age 75, left hemisphere 97.1
1783 Male, age 74, unknown 94.1
2824 Male, age 61, right hemisphere 94.1
1856 Female, age 91, right hemisphere 93.9
1806 Female, age 85, left hemisphere 92.7
2732 Male, age 80, right hemisphere 89.2
Nucleus basalis of Meynert
nTPM: 102.0
2821 Male, age 75, both hemispheres 110.8
2569 Male, age 61, both hemispheres 106.5
2393 Male, age 80, right hemisphere 100.6
2484 Female, age 94, left hemisphere 90.0
Nucleus of the diagonal band
nTPM: 95.0
1812 Female, age 91, both hemispheres 102.6
1979 Male, age 74, unknown 96.5
2195 Female, age 85, both hemispheres 94.2
2775 Male, age 80, right hemisphere 93.1
2029 Male, age 61, right hemisphere 88.3
Olfactory tubercle
nTPM: 88.4
1846 Male, age 80, right hemisphere 92.6
2856 Male, age 75, right hemisphere 91.6
1998 Female, age 91, both hemispheres 87.6
2487 Female, age 94, left hemisphere 81.6
Putamen
nTPM: 97.0
1829 Male, age 74, unknown 108.3
2482 Female, age 94, left hemisphere 100.4
2647 Male, age 75, left hemisphere 99.5
2489 Female, age 72, unknown 93.3
2466 Female, age 79, unknown 93.1
1937 Female, age 91, right hemisphere 92.5
1838 Male, age 80, right hemisphere 92.1
Septal nuclei
nTPM: 93.2
2199 Male, age 80, right hemisphere 99.3
2059 Female, age 85, both hemispheres 96.1
1960 Male, age 74, unknown 93.3
2629 Female, age 94, right hemisphere 93.0
2009 Female, age 91, both hemispheres 92.0
2031 Female, age 72, unknown 90.5
2394 Male, age 61, left hemisphere 87.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 95.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 92.9
Samples: 246

Max nTPM: 149.0
Min nTPM: 58.0
Std nTPM: 14.9
Median nTPM: 89.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 149.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 145.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 145.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 139.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 136.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 131.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 130.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 128.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 127.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 124.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 124.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 86.0
Samples: 246

Max nTPM: 139.6
Min nTPM: 53.9
Std nTPM: 14.1
Median nTPM: 83.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 139.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 139.1
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 137.9
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 132.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 132.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 128.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 123.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 122.1
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 118.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 114.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 114.1
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Brain - Putamen (basal ganglia)
Average nTPM: 95.8
Samples: 205

Max nTPM: 154.7
Min nTPM: 66.5
Std nTPM: 16.5
Median nTPM: 92.8
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 154.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 153.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 146.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 145.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 138.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 131.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 131.2
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 131.0
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 130.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 128.8
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 126.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.0
FF:10164-103B2 76 years, female 1.0
Globus pallidus
Scaled Tags Per Million: 0.9
FF:10161-103A8 76 years, female 1.8
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.2
FF:10037-101F1 23-56 years, mixed 0.2
Putamen
Scaled Tags Per Million: 1.2
FF:10176-103C5 60 years, female 1.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 159.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 133.7
Samples: 4

Max nTPM: 137.9
Min nTPM: 130.1
Sample A Male 134.8
Sample B Male 137.9
Sample C Female 130.1
Sample D Female 132.1
Septum
nTPM: 159.2
Samples: 4

Max nTPM: 167.0
Min nTPM: 150.2
Sample A Male 150.2
Sample B Male 167.0
Sample C Female 159.8
Sample D Female 159.8
Ventral forebrain
nTPM: 140.4
Samples: 4

Max nTPM: 152.9
Min nTPM: 130.7
Sample A Male 152.9
Sample B Male 130.7
Sample C Female 144.2
Sample D Female 133.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
68161477 Antisense, RP_041122_01_E07, Mouse strain C57BL/6J (56 days, male) 3.1
Pallidum
Expression energy: 2.8
68161477 Antisense, RP_041122_01_E07, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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